View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13010_high_3 (Length: 488)
Name: NF13010_high_3
Description: NF13010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13010_high_3 |
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| [»] scaffold0649 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 13 - 466
Target Start/End: Complemental strand, 20980243 - 20979785
Alignment:
| Q |
13 |
tgaatgccaccaccttatattttccggttgtattatcgtagccaaatgaaaatctgaaatagtcatgctggtccataaaagcattgctaacacagccgac |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
20980243 |
tgaatgccaccaccttatattttccggttgtattatcgtagccaaatgaaaatctgaaatagtcatgctggtccataaacgcattgctaacacagccgac |
20980144 |
T |
|
| Q |
113 |
tattttcgacactgacctcgttgctgggttacaaaaacggagatgaaagttttgaacattaccgtattggtatatatattcactgagcatgcatatcaat |
212 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20980143 |
tattttcgacactgacctcgttgctgggttccaaaaacggagatgaaagttttgaacattaccgtattggtatatatattcactgagcatgcatatcaat |
20980044 |
T |
|
| Q |
213 |
ccattggaggaaccaagaacccggttacagtcttcgttattaaattgatagtgactgagtaagaaatcttcggaaatggttataaactgattaggcaagg |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
20980043 |
ccattggaggaaccaagaacccggttacagtcttcgttattaaattgatagtgactgagtacgaaatcttcggaaatggttataaactgattaggcaagg |
20979944 |
T |
|
| Q |
313 |
aatagtctttgttcttgcacgaaaacattgtga-----ggtgtttagggtttcgtggagatgatttcatgagatgcattttggcgaaggtgggatcagag |
407 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
20979943 |
aatagtctttgttcttgcacgaaaacattgtgaggtgaggtgtttagggtttcgtggagatgatttaatgaggtgcattttggcgaaggtgggatcagag |
20979844 |
T |
|
| Q |
408 |
gagatgagtgaattccatgatttgcaaacacatttgagttgcatcagaaattttatgtc |
466 |
Q |
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| T |
20979843 |
gagatgagtgaattccatgatttgcaaacacatttgagttgcatcagaaattttatgtc |
20979785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 13 - 466
Target Start/End: Complemental strand, 20967420 - 20966973
Alignment:
| Q |
13 |
tgaatgccaccaccttatattttccggttgtattatcgtagccaaatgaaaatctgaaatagtcatgctggtccataaaagcattgctaacacagccgac |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| | |||||||||||| |||| ||| ||||||||| |
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| T |
20967420 |
tgaatgccaccaccttatattttccggttgtattatcgcaaccaaatgaaaatctgaaatagtcataccggtccataaaagtattggtaaaacagccgac |
20967321 |
T |
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| Q |
113 |
tattttcgacactgacctcgttgctgggttacaaaaacggagatgaaagttttgaacattaccgtattggtatatatattcactgagcatgcatatcaat |
212 |
Q |
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|||||| |||||||||||||| |||||||| || ||||||||||| ||||||||||||||| |||||||||| || ||||||||||||||||||| |
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| T |
20967320 |
tatttttgacactgacctcgtggctgggttccagaaacggagatggaagttttgaacatta------tggtatatatgttgactgagcatgcatatcaat |
20967227 |
T |
|
| Q |
213 |
ccattggaggaaccaagaacccggttacagtcttcgttattaaattgatagtgactgagtaagaaatcttcggaaatggttataaactgattaggcaagg |
312 |
Q |
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|||||||||||||||||||| |||||||||||||||| || | |||||||||| |||||| ||||||| ||||||||||||||||||| |||| |||| |
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| T |
20967226 |
ccattggaggaaccaagaactaggttacagtcttcgttcttcacttgatagtgattgagtacaaaatctttggaaatggttataaactgactaggaaagg |
20967127 |
T |
|
| Q |
313 |
aatagtctttgttcttgcacgaaaacattgtgaggtgtttagggtttcgtggagatgatttcatgagatgcattttggcgaaggtgggatcagaggagat |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
20967126 |
aatagtctttgttcttgcacgaaaacattgtgaggtgtttagggttttgtggagatgatttaatgaggtgcattttggcgaaggtgggatcagaggagat |
20967027 |
T |
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| Q |
413 |
gagtgaattccatgatttgcaaacacatttgagttgcatcagaaattttatgtc |
466 |
Q |
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| T |
20967026 |
gagtgaattccatgatttgcaaacacatttgagttgcatcagaaattttatgtc |
20966973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 366 - 447
Target Start/End: Complemental strand, 4721 - 4643
Alignment:
| Q |
366 |
gatgatttcatgagatgcattttggcgaaggtgggatcagaggagatgagtgaattccatgatttgcaaacacatttgagtt |
447 |
Q |
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||||||||| |||| ||||||| | ||||| ||||||| |||||||||||| ||||||||||||| ||||||||||||| |
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| T |
4721 |
gatgatttcttgaggtgcatttggacgaagatgggatc---ggagatgagtgagttccatgatttgctcacacatttgagtt |
4643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 4901 - 4865
Alignment:
| Q |
192 |
tcactgagcatgcatatcaatccattggaggaaccaa |
228 |
Q |
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| T |
4901 |
tcactgagcatgcatatcaatccattgcatgaaccaa |
4865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 5069 - 5013
Alignment:
| Q |
18 |
gccaccaccttatattttccggttgtattatcgtagccaaatgaaaatctgaaatag |
74 |
Q |
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||||| |||||||||||||||||||| ||||| || ||||| |||||| | |||||| |
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| T |
5069 |
gccacaaccttatattttccggttgtgttatcataaccaaacgaaaattttaaatag |
5013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 460
Target Start/End: Original strand, 6402564 - 6402619
Alignment:
| Q |
405 |
gaggagatgagtgaattccatgatttgcaaacacatttgagttgcatcagaaattt |
460 |
Q |
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||||| || |||||||||||||||||||| |||||||||||| |||||| ||||| |
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| T |
6402564 |
gaggaaattagtgaattccatgatttgcagacacatttgagtgtcatcaggaattt |
6402619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 453
Target Start/End: Original strand, 12735682 - 12735715
Alignment:
| Q |
420 |
ttccatgatttgcaaacacatttgagttgcatca |
453 |
Q |
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||||||||||||||||||||||||| |||||||| |
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| T |
12735682 |
ttccatgatttgcaaacacatttgaattgcatca |
12735715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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