View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13010_low_1 (Length: 553)
Name: NF13010_low_1
Description: NF13010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13010_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 8 - 538
Target Start/End: Complemental strand, 12920202 - 12919673
Alignment:
| Q |
8 |
agagatgaattgatgtctttactcccaactaaagttgtttctgagttggtaatgtgttaaaatacattagtttgtctttgcataacattaccatgattgt |
107 |
Q |
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| T |
12920202 |
agagatgaattgatgtttttactcccaactaaagttgtttctgagttggtaatgtgtttaaatacattagtttgtctttgcataacattaccatgattgt |
12920103 |
T |
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| Q |
108 |
ataaatcatttattaaaacgtaacttctgtatttggttataggtgatcatgcttatggcagagaatattcgagaggcgcaacaccataagacttcacaag |
207 |
Q |
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| T |
12920102 |
ataaatcatttattaaaacgtaacttctgtatttggttataggtgatcacgcttatggcagagaatattcgagaggcgcaacaccataagacttctcaag |
12920003 |
T |
|
| Q |
208 |
ctgtttggtgcttaccaccttcctttgaggtaatcatttaaataaataacttcttagttcattaaccttttgttgggtttaaaaatatatgtacatgtgc |
307 |
Q |
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| T |
12920002 |
ctgtttggtgcttaccaccttcctttgaggtaatcatttaaataaataacttcttagtccattaaccttttgttgggtttaaaa--atatgtacatgtgc |
12919905 |
T |
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| Q |
308 |
ttaaactaaagatcaattttaatggattaggtggactatcnnnnnnntatgcctcaagttatgatatcacaaaagta-tttgcaaggtggatgcctcctt |
406 |
Q |
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| T |
12919904 |
ttaaactaaagatcaattttaatggattaggtggactatcaaaaaaatatgcctcaagttatgatatcacaaaagtattttgcaaggtggatgcctcctt |
12919805 |
T |
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| Q |
407 |
atcctcatttgaagtttgtaagtatttccttcataatgcctcttgcgtttgagatgaaatatgttttctgagatgttgaaagtgatacaacaaatatgtt |
506 |
Q |
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| T |
12919804 |
atcctcatttgaggtttgtaagtatttccttcataatgcctcttgcgtttgagatgaaatatgttttctgagatgttgaaagtgatataacaaatatgtt |
12919705 |
T |
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| Q |
507 |
ggcttcaataatggattgttgttgtgcatata |
538 |
Q |
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| T |
12919704 |
ggcttcaataatggattgttgttgtgcatata |
12919673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 68 - 538
Target Start/End: Original strand, 12915081 - 12915550
Alignment:
| Q |
68 |
aatacattagtttgtctttgcataacattaccatgattgtataaatcatttattaaaacgtaacttctgtatttggttataggtgatcatgcttatggca |
167 |
Q |
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| T |
12915081 |
aatacattagtttgtctttgcataacattaccatgattgtataaatcatttattaaaacgtaacttctgtatttggttataggtgatcacgcttatggca |
12915180 |
T |
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| Q |
168 |
gagaatattcgagaggcgcaacaccataagacttcacaagctgtttggtgcttaccaccttcctttgaggtaatcatttaaataaataacttcttagttc |
267 |
Q |
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| T |
12915181 |
gagaatattcgagaggcgcaacaccataagacttcacaagctgtttggtgcttaccaccttcctttgaggtaatcatttaaataaataacttcttagttc |
12915280 |
T |
|
| Q |
268 |
attaaccttttgttgggtttaaaaatatatgtacatgtgcttaaactaaagatcaattttaatggattaggtggactatcnnnnnnntatgcctcaagtt |
367 |
Q |
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| T |
12915281 |
attaaccttttgttgggtttaaaa--atatgtacctgtgcttaaactaaagatcaattttaatggattaggtggactatcaaaaaaatatgcctcaagtt |
12915378 |
T |
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| Q |
368 |
atgatatcacaaaagtatt-tgcaaggtggatgcctccttatcctcatttgaagtttgtaagtatttccttcataatgcctcttgcgtttgagatgaaat |
466 |
Q |
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| T |
12915379 |
atgatatcacaaaagtattgtgcaaggtggatgcctccttatcctcatttgaagtttgtaagtatttccttcataatgcctcttgcgtttgagatgaaat |
12915478 |
T |
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| Q |
467 |
atgttttctgagatgttgaaagtgatacaacaaatatgttggcttcaataatggattgttgttgtgcatata |
538 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12915479 |
atgttttctgagatgttgaaagtgatataacaaatatgttggcttcaataatggattgttgttgtgcatata |
12915550 |
T |
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