View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13010_low_11 (Length: 272)
Name: NF13010_low_11
Description: NF13010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13010_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 257
Target Start/End: Complemental strand, 11208937 - 11208700
Alignment:
| Q |
20 |
atgagcgtaataattcctaggaataccacgattccgaccaatatggaacatgtatacaccaccagtgaacccaaccaaaatagtttatcaatttctgttt |
119 |
Q |
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| T |
11208937 |
atgagcgtaataattcctaggaataccacgattcctaccaatatggaagatgtatacaccaccagtgaacccaaccaaaatagtttatcaatttccgttt |
11208838 |
T |
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| Q |
120 |
atgagggtgagaggcaaacaactaaggaaaacaacttgcttggatcttttgagtttgaaattcctccacgtccaaaaggtgatcaaaaattcgtggtcaa |
219 |
Q |
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| T |
11208837 |
atgagggtgagaggcaaacaactaaggacaacaacttgctaggatcttttgagtttgaaattcctccatgtccaaaaggtgatcaaaaattcgtggtcaa |
11208738 |
T |
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| Q |
220 |
cttccaaattaacgatgatggcatcttagacgtctctg |
257 |
Q |
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| T |
11208737 |
cttccaaattaacgatgatggcatcttagacgtctctg |
11208700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 24 - 257
Target Start/End: Complemental strand, 11170111 - 11169878
Alignment:
| Q |
24 |
gcgtaataattcctaggaataccacgattccgaccaatatggaacatgtatacaccaccagtgaacccaaccaaaatagtt-tatcaatttctgtttatg |
122 |
Q |
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| T |
11170111 |
gcgtaataattcctaggaataccacgattcctaccaatagggaaaagtcattcaccacagctgaagacaacctaaa-agttatttcgattcatgtttatg |
11170013 |
T |
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| Q |
123 |
agggtgagaggcaaacaactaaggaaaacaacttgcttggatcttttgagtttgaaattcctccacgtccaaaaggtgatcaaaaattcgtggtcaactt |
222 |
Q |
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| T |
11170012 |
agggtgagaggcaaataactaaggacaacaacttgctaggagcttttgagtttgaaattcctccacgtccaaaaggtgttctacatttcgtggtcaactt |
11169913 |
T |
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| Q |
223 |
ccaaattaacgatgatggcatcttagacgtctctg |
257 |
Q |
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| T |
11169912 |
ccaaattaacgatgatggcatcttagacgtctctg |
11169878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 117 - 247
Target Start/End: Complemental strand, 11275402 - 11275272
Alignment:
| Q |
117 |
tttatgagggtgagaggcaaacaactaaggaaaacaacttgcttggatcttttgagtttgaaattcctccacgtccaaaaggtgatcaaaaattcgtggt |
216 |
Q |
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| T |
11275402 |
tttatgagggtgagaggaaaacaactaaggacaacaacttgctaggaacttttaggtttgaaattcctccatgtccagtagatgttcctcaattggtggt |
11275303 |
T |
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| Q |
217 |
caacttccaaattaacgatgatggcatctta |
247 |
Q |
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| T |
11275302 |
caacttccaaattgacaatgatggcatctta |
11275272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 11155741 - 11155693
Alignment:
| Q |
115 |
tgtttatgagggtgagaggcaaacaactaaggaaaacaacttgcttgga |
163 |
Q |
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| T |
11155741 |
tgtttatgaaggtgagaggaaaataactagggaaaacaacttgcttgga |
11155693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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