View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13010_low_13 (Length: 247)

Name: NF13010_low_13
Description: NF13010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13010_low_13
NF13010_low_13
[»] chr5 (4 HSPs)
chr5 (1-164)||(38997580-38997743)
chr5 (70-164)||(28803995-28804088)
chr5 (68-136)||(37497494-37497562)
chr5 (31-137)||(13163529-13163633)
[»] chr1 (3 HSPs)
chr1 (70-164)||(31321285-31321379)
chr1 (68-164)||(31322265-31322361)
chr1 (68-163)||(34650759-34650854)
[»] chr4 (6 HSPs)
chr4 (78-153)||(36139553-36139628)
chr4 (68-157)||(8332241-8332330)
chr4 (73-137)||(7491633-7491697)
chr4 (74-138)||(7492701-7492765)
chr4 (74-128)||(7500732-7500786)
chr4 (73-153)||(7499666-7499746)
[»] chr8 (4 HSPs)
chr8 (21-137)||(2687436-2687551)
chr8 (74-158)||(17097290-17097374)
chr8 (88-133)||(27824191-27824236)
chr8 (120-164)||(27823721-27823765)
[»] chr7 (3 HSPs)
chr7 (73-158)||(39705007-39705092)
chr7 (81-162)||(3704701-3704782)
chr7 (68-156)||(35711291-35711379)
[»] chr6 (1 HSPs)
chr6 (68-137)||(28636182-28636250)
[»] chr2 (6 HSPs)
chr2 (88-160)||(18160734-18160806)
chr2 (96-162)||(18160655-18160721)
chr2 (88-160)||(18308495-18308567)
chr2 (96-162)||(18159739-18159805)
chr2 (68-158)||(12028389-12028478)
chr2 (96-162)||(18308580-18308646)
[»] chr3 (1 HSPs)
chr3 (109-162)||(53143211-53143264)


Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 38997743 - 38997580
Alignment:
Q  1 atttttaatctttgtaccaaaaaatcatcggaatttgacagttttatgatctatatgtgannnnnnnagcagaaatggaggatataggtagaagaaatgg 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||       ||||||||| |||||||||||||||||||||||    
T  38997743 atttttaatctttgtaccaaaaaatcatcggaatttgacaattttatgatctatatgtgatttttttagcagaaatcgaggatataggtagaagaaatgg 38997644  T
Q  101 tgaatgtgtgcgactaagatgaaaatggaggaagaaaaacaggaaaaagatggaagaaccaagg 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38997643 tgaatgtgtgcgactaagatgaaaatggaggaagaaaaacaggaaaaagatggaagaaccaagg 38997580  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 70 - 164
Target Start/End: Complemental strand, 28804088 - 28803995
Alignment:
Q  70 cagaaatggaggatataggtagaagaaatggtgaatgtgtgcgactaagatgaaaatggaggaagaaaaacaggaaaaagatggaagaaccaagg 164  Q
    ||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||| || ||||||| | |||||||||||||||||| |||||    
T  28804088 cagaaatgg-ggatatgggtagaagaaatggtgaaggtgtgcgactaagatgaaaattgacgaagaaagataggaaaaagatggaagaatcaagg 28803995  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 37497562 - 37497494
Alignment:
Q  68 agcagaaatggaggatataggtagaagaaatggtgaatgtgtgcgactaagatgaaaatggaggaagaa 136  Q
    |||| ||||||| ||||| | |||||||||||||||| |||||| ||||||||||||||||||||||||    
T  37497562 agcataaatggatgatatggatagaagaaatggtgaaagtgtgcaactaagatgaaaatggaggaagaa 37497494  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 137
Target Start/End: Original strand, 13163529 - 13163633
Alignment:
Q  31 gaatttgacagttttatgatctatatgtgannnnnnnagcagaaatggaggatataggtagaagaaatggtgaatgtgtgcgactaagatgaaaatggag 130  Q
    |||||| | |||||||||||||||||||||       |||| | ||||||||||||||||||| |||| ||||| |||||||  |||| |||||||| ||    
T  13163529 gaattttaaagttttatgatctatatgtgaattttt-agcaaatatggaggatataggtagaa-aaattgtgaaggtgtgcggttaagttgaaaatgaag 13163626  T
Q  131 gaagaaa 137  Q
    |||||||    
T  13163627 gaagaaa 13163633  T

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Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 70 - 164
Target Start/End: Complemental strand, 31321379 - 31321285
Alignment:
Q  70 cagaaatggaggatataggtagaagaaatggtgaatgtgtgcgactaagatgaaaatggaggaagaaaaacaggaaaaagatggaagaaccaagg 164  Q
    |||||||||||||||| |||||| ||||||||||| ||||||| ||||||||||||| |||||||||| |||||||||||||||||| |||||||    
T  31321379 cagaaatggaggatatgggtagacgaaatggtgaaggtgtgcggctaagatgaaaatagaggaagaaagacaggaaaaagatggaaggaccaagg 31321285  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 68 - 164
Target Start/End: Original strand, 31322265 - 31322361
Alignment:
Q  68 agcagaaatggaggatataggtagaagaaatggtgaatgtgtgcgactaagatgaaaatggaggaagaaaaacaggaaaaagatggaagaaccaagg 164  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||  ||||||||| ||| ||| ||||||||||||||||||    
T  31322265 agcagaaatggaggatatgggtagaagaaatggtgaaggtgtgcgactaagataaaaataaaggaagaaagacacgaagaagatggaagaaccaagg 31322361  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 163
Target Start/End: Complemental strand, 34650854 - 34650759
Alignment:
Q  68 agcagaaatggaggatataggtagaagaaatggtgaatgtgtgcgactaagatgaaaatggaggaagaaaaacaggaaaaagatggaagaaccaag 163  Q
    |||||||||  ||| ||| ||||||||||||||||||  ||||| ||||| || ||||| ||| |||||| ||| |||| ||||| ||||||||||    
T  34650854 agcagaaataaagggtatgggtagaagaaatggtgaagatgtgcaactaaaataaaaatagagaaagaaagacatgaaatagatgtaagaaccaag 34650759  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 153
Target Start/End: Original strand, 36139553 - 36139628
Alignment:
Q  78 gaggatataggtagaagaaatggtgaatgtgtgcgactaagatgaaaatggaggaagaaaaacaggaaaaagatgg 153  Q
    |||||||||| | ||||||||||||||| |||||||||||||| ||||||| |||||||| ||| ||| |||||||    
T  36139553 gaggatatagattgaagaaatggtgaatatgtgcgactaagattaaaatggtggaagaaagacatgaagaagatgg 36139628  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 157
Target Start/End: Original strand, 8332241 - 8332330
Alignment:
Q  68 agcagaaatggaggatataggtagaagaaatggtgaatgtgtgcgactaagatgaaaatggaggaagaaaaacaggaaaaagatggaaga 157  Q
    |||||||||||  ||||| | ||||||||||| |||| ||||| | ||||||||||||| ||||||||||||  |||| |||||||||||    
T  8332241 agcagaaatggtcgatatggatagaagaaatgatgaaagtgtgtggctaagatgaaaatagaggaagaaaaattggaagaagatggaaga 8332330  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 7491697 - 7491633
Alignment:
Q  73 aaatggaggatataggtagaagaaatggtgaatgtgtgcgactaagatgaaaatggaggaagaaa 137  Q
    ||||| ||||||| |||||||||||  |||||| |||||||||||||||||||||| ||||||||    
T  7491697 aaatgaaggatatgggtagaagaaactgtgaatatgtgcgactaagatgaaaatggtggaagaaa 7491633  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 7492701 - 7492765
Alignment:
Q  74 aatggaggatataggtagaagaaatggtgaatgtgtgcgactaagatgaaaatggaggaagaaaa 138  Q
    |||||||||||| |||||||||||| |||||| |||||| |||||||||||||||  ||||||||    
T  7492701 aatggaggatatgggtagaagaaatagtgaatatgtgcggctaagatgaaaatggttgaagaaaa 7492765  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 7500732 - 7500786
Alignment:
Q  74 aatggaggatataggtagaagaaatggtgaatgtgtgcgactaagatgaaaatgg 128  Q
    |||||||||||| |||||||||||| |||||| |||||| |||||||||||||||    
T  7500732 aatggaggatatgggtagaagaaatagtgaatatgtgcggctaagatgaaaatgg 7500786  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 153
Target Start/End: Complemental strand, 7499746 - 7499666
Alignment:
Q  73 aaatggaggatataggtagaagaaatggtgaatgtgtgcgactaagatgaaaatggaggaagaaaaacaggaaaaagatgg 153  Q
    ||||| ||||||| |||||||||||  |||||| |||| | || |||||||||||| |||||||| ||| ||| |||||||    
T  7499746 aaatgaaggatatgggtagaagaaactgtgaatatgtgtggcttagatgaaaatggtggaagaaagacatgaagaagatgg 7499666  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 137
Target Start/End: Complemental strand, 2687551 - 2687436
Alignment:
Q  21 aaaatcatcggaatttgacagttttatgatctatatgtgannnnnnnagcagaaatggaggatataggtagaagaaatggtgaatgtgtgcgactaagat 120  Q
    |||||||| ||||||| ||||||||||||||||| | |||       |||||||||||||||||| ||||    |||||||||| ||||||| |||||||    
T  2687551 aaaatcatgggaattttacagttttatgatctatgtatgaattttt-agcagaaatggaggatatgggtattgaaaatggtgaaggtgtgcggctaagat 2687453  T
Q  121 gaaaatggaggaagaaa 137  Q
    ||||||||| |||||||    
T  2687452 gaaaatggaagaagaaa 2687436  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 158
Target Start/End: Complemental strand, 17097374 - 17097290
Alignment:
Q  74 aatggaggatataggtagaagaaatggtgaatgtgtgcgactaagatgaaaatggaggaagaaaaacaggaaaaagatggaagaa 158  Q
    |||||||||||| ||||||||||||| ||||| | |||  |||||||||||||||   |||||| ||| ||| ||||||| ||||    
T  17097374 aatggaggatatgggtagaagaaatgttgaatatatgcagctaagatgaaaatggtaaaagaaagacatgaagaagatggtagaa 17097290  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 27824191 - 27824236
Alignment:
Q  88 gtagaagaaatggtgaatgtgtgcgactaagatgaaaatggaggaa 133  Q
    |||||| |||||||||||||||||| | ||||| ||||||||||||    
T  27824191 gtagaataaatggtgaatgtgtgcggcaaagataaaaatggaggaa 27824236  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 164
Target Start/End: Complemental strand, 27823765 - 27823721
Alignment:
Q  120 tgaaaatggaggaagaaaaacaggaaaaagatggaagaaccaagg 164  Q
    |||||||| ||||||||| ||| ||| ||||||||||||||||||    
T  27823765 tgaaaatgaaggaagaaagacaagaagaagatggaagaaccaagg 27823721  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 158
Target Start/End: Original strand, 39705007 - 39705092
Alignment:
Q  73 aaatggaggatataggtagaagaaatggtgaatgtgtgcgactaagatgaaaatggaggaagaaaaacaggaaaaagatggaagaa 158  Q
    |||||||| |||| |||| |||||||||||||| |||||| | ||||||||||||| |||||||| ||| ||| | ||||||||||    
T  39705007 aaatggagaatatgggtataagaaatggtgaatatgtgcggccaagatgaaaatggtggaagaaagacatgaagaggatggaagaa 39705092  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 162
Target Start/End: Complemental strand, 3704782 - 3704701
Alignment:
Q  81 gatataggtagaagaaatggtgaatgtgtgcgactaagatgaaaatggaggaagaaaaacaggaaaaagatggaagaaccaa 162  Q
    ||||| ||||||||||||| |||| |||||| ||||||  | ||||||||||||||| ||| ||| ||||||||||| ||||    
T  3704782 gatatgggtagaagaaatgctgaaggtgtgcaactaagggggaaatggaggaagaaagacatgaagaagatggaagagccaa 3704701  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 156
Target Start/End: Original strand, 35711291 - 35711379
Alignment:
Q  68 agcagaaatggaggatataggtagaagaaatggtgaatgtgtgcgactaagatgaaaatggaggaagaaaaacaggaaaaagatggaag 156  Q
    ||||||||||||||| || | ||||||||| |||||| || |||   |||| |||||| ||||||||||| ||| ||| ||||||||||    
T  35711291 agcagaaatggaggaaatggatagaagaaacggtgaaggtatgcaggtaagttgaaaagggaggaagaaagacatgaagaagatggaag 35711379  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 28636182 - 28636250
Alignment:
Q  68 agcagaaatggaggatataggtagaagaaatggtgaatgtgtgcgactaagatgaaaatggaggaagaaa 137  Q
    |||| ||||||||||| | |||| ||||||||||||| ||||| ||||||||||||||||||||||||||    
T  28636182 agcaaaaatggaggat-tgggtaaaagaaatggtgaaggtgtgagactaagatgaaaatggaggaagaaa 28636250  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 160
Target Start/End: Original strand, 18160734 - 18160806
Alignment:
Q  88 gtagaagaaatggtgaatgtgtgcgactaagatgaaaatggaggaagaaaaacaggaaaaagatggaagaacc 160  Q
    |||||||||||||||||  |||||| ||||||||||||||| |||| ||| | ||||| ||||||||||||||    
T  18160734 gtagaagaaatggtgaagatgtgcggctaagatgaaaatggtggaaaaaagataggaagaagatggaagaacc 18160806  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 18160721 - 18160655
Alignment:
Q  96 aatggtgaatgtgtgcgactaagatgaaaatggaggaagaaaaacaggaaaaagatggaagaaccaa 162  Q
    ||||||||| |||||||||||  |||||||||| |||||||| ||||||| | ||||||||||||||    
T  18160721 aatggtgaaggtgtgcgactacaatgaaaatggtggaagaaagacaggaagatgatggaagaaccaa 18160655  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 160
Target Start/End: Complemental strand, 18308567 - 18308495
Alignment:
Q  88 gtagaagaaatggtgaatgtgtgcgactaagatgaaaatggaggaagaaaaacaggaaaaagatggaagaacc 160  Q
    |||||||||||||| ||  |||||  ||||||||||||||| |||||||| | ||||| ||||||||||||||    
T  18308567 gtagaagaaatggtaaagatgtgcagctaagatgaaaatggtggaagaaagataggaagaagatggaagaacc 18308495  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 18159805 - 18159739
Alignment:
Q  96 aatggtgaatgtgtgcgactaagatgaaaatggaggaagaaaaacaggaaaaagatggaagaaccaa 162  Q
    ||||||||| |||||||||||  |||||||||| |||||||| | ||||| | ||||||||||||||    
T  18159805 aatggtgaaggtgtgcgactacaatgaaaatggtggaagaaagataggaagatgatggaagaaccaa 18159739  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 158
Target Start/End: Complemental strand, 12028478 - 12028389
Alignment:
Q  68 agcagaaatggaggatataggtagaagaaatggtgaatgtgtgcgactaagatgaaaatggaggaagaaaaacaggaaaaagatggaagaa 158  Q
    ||||||||||||||||||   || |||||||  | || ||||||| |||||||||||||||| | ||||| ||| ||| ||||||||||||    
T  12028478 agcagaaatggaggatatgtttataagaaataataaaggtgtgcggctaagatgaaaatgga-gtagaaagacatgaagaagatggaagaa 12028389  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 162
Target Start/End: Original strand, 18308580 - 18308646
Alignment:
Q  96 aatggtgaatgtgtgcgactaagatgaaaatggaggaagaaaaacaggaaaaagatggaagaaccaa 162  Q
    ||||||||| |||||||| ||  ||| |||||| |||||||| ||||||| | ||||||||||||||    
T  18308580 aatggtgaaggtgtgcgaatacaatggaaatggtggaagaaagacaggaagatgatggaagaaccaa 18308646  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 53143264 - 53143211
Alignment:
Q  109 tgcgactaagatgaaaatggaggaagaaaaacaggaaaaagatggaagaaccaa 162  Q
    |||| ||||||||||||||||| |||||| | ||||| | ||||||||||||||    
T  53143264 tgcggctaagatgaaaatggagaaagaaataaaggaagatgatggaagaaccaa 53143211  T

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