View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13010_low_17 (Length: 227)
Name: NF13010_low_17
Description: NF13010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13010_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 34925841 - 34925693
Alignment:
| Q |
1 |
ctgccgaagctcgaacccagaagcacaaagctgctgaacttccaaagcagatatctccttttgatccttttgaactttcaaagcagtcaactgatgaatt |
100 |
Q |
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| T |
34925841 |
ctgccgaagctcgaaaccataagcacaaagctgatgaacttccaaagcagatatctccttttgatccttttgaacttccaaagcagtcaactgatgaatt |
34925742 |
T |
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| Q |
101 |
tctaaggcagaattattctaagtttctggcttctttagacgctcgagac |
149 |
Q |
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| T |
34925741 |
tcgaaggcagaattatactaagtttctggcttctttagacgctcgagac |
34925693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 34930281 - 34930136
Alignment:
| Q |
1 |
ctgccgaagctcgaacccagaagcacaaagctgctgaacttccaaagcagatatctccttttgatccttttgaactttcaaagcagtcaactgatgaatt |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
34930281 |
ctgccgaagctcgaaaccagaagcacaaagctgctgaacttccaaagcagatatctccttttgatccttttgaacttccaaagcagtcaagtgatgaatt |
34930182 |
T |
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| Q |
101 |
tctaaggcagaattattctaagtttctggcttctttagacgctcga |
146 |
Q |
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| T |
34930181 |
tcgaaggcagaatttttttaagtttctggcttctatagaagctcga |
34930136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 34935797 - 34935652
Alignment:
| Q |
1 |
ctgccgaagctcgaacccagaagcacaaagctgctgaacttccaaagcagatatctccttttgatccttttgaactttcaaagcagtcaactgatgaatt |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34935797 |
ctgccgaagctcgaaaccagaagcacaaagctgctgagcttccaaagcagatatctccttttgatccttttgaacttccaaagcagtcaactgatgaatt |
34935698 |
T |
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| Q |
101 |
tctaaggcagaattattctaagtttctggcttctttagacgctcga |
146 |
Q |
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|| ||||||||||| || |||||||||||||||| |||| |||||| |
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| T |
34935697 |
tcgaaggcagaatttttttaagtttctggcttctatagaagctcga |
34935652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 21 - 149
Target Start/End: Complemental strand, 34929151 - 34929023
Alignment:
| Q |
21 |
aagcacaaagctgctgaacttccaaagcagatatctccttttgatccttttgaactttcaaagcagtcaactgatgaatttctaaggcagaattattcta |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| || ||||||| || || | |
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| T |
34929151 |
aagcacaaagctgctgaacttccaaagcagatatctccttttgatccttttaaacttccaaagcagtcaacttatgaagctcgaaggcagcgtttttttg |
34929052 |
T |
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| Q |
121 |
agtttctggcttctttagacgctcgagac |
149 |
Q |
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| T |
34929051 |
attttctggattctttagacgctcgagac |
34929023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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