View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13010_low_4 (Length: 437)

Name: NF13010_low_4
Description: NF13010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13010_low_4
NF13010_low_4
[»] chr3 (5 HSPs)
chr3 (1-417)||(25748207-25748629)
chr3 (81-254)||(1200868-1201037)
chr3 (1-86)||(1200752-1200837)
chr3 (345-394)||(25924250-25924299)
chr3 (252-291)||(25924162-25924201)
[»] chr6 (6 HSPs)
chr6 (81-308)||(32688644-32688865)
chr6 (81-254)||(19811761-19811930)
chr6 (81-254)||(22520828-22521000)
chr6 (1-86)||(19811645-19811730)
chr6 (1-86)||(22520712-22520797)
chr6 (1-86)||(32688528-32688613)
[»] chr2 (2 HSPs)
chr2 (81-308)||(25206864-25207085)
chr2 (1-80)||(25207122-25207201)
[»] chr8 (2 HSPs)
chr8 (1-86)||(18296833-18296918)
chr8 (80-198)||(18296948-18297063)
[»] chr4 (2 HSPs)
chr4 (1-86)||(47852268-47852353)
chr4 (82-198)||(47852385-47852498)


Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 25748629 - 25748207
Alignment:
Q  1 tcatccaatgtgattgtcatttcacctacaggaaggtgaaaactactcgttcctgagtgccacctctctgagaaagcaatcaagagcgggtaaaaactag 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  25748629 tcatccaaggtgattgtcatttcacctacaggaaggtgaaaactactcgttcctgagtgccacctctctaagaaagcaatcaagagcgggtaaagactag 25748530  T
Q  101 atggcttgatgacatttcggaaccaccccatagtagcagcaacatctggaggtaatgctgatttcaagtctattattcacttggcattgttaagcacctg 200  Q
    |||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  25748529 atggcttgatgacattccggaaccaccctatagcagcagcaacatctggaggtaatgctgatttcaagtctattattcacttggcattgttaagcaccta 25748430  T
Q  201 atgtgtc-ttttcacgaccctgagaagaagaaaaaagcaaatataaattgtt-aaactattataaccaacagtcctacaccatatacctcaccttgagga 298  Q
    ||||||| |||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  25748429 atgtgtctttttcacgaccctgagaagaagaagaaggcaaatataaattgttaaaactattataaccaacagtcctacaccatatacctcaccctgagga 25748330  T
Q  299 agaaagtaaatcatgcgtag----nnnnnnnnnnntcaagttgatgcatgatgatgaattttaaaatgtctaatgtgtagatcactaattatcagtaaaa 394  Q
    ||||||||||||||||||||               ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  25748329 agaaagtaaatcatgcgtagaaaataaaaaaaaaatcaagttgatgcatgatgatggattttaaaatgtctaatgtgtagatcactaattatcaataaaa 25748230  T
Q  395 acaattccccactttacaaatac 417  Q
    |||||||||||||||||||||||    
T  25748229 acaattccccactttacaaatac 25748207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 81 - 254
Target Start/End: Original strand, 1200868 - 1201037
Alignment:
Q  81 caagagcgggtaaaaactagatggcttgatgacatttcggaaccaccccatagtagcagcaacatctggaggtaatgctgatttcaagtctattattcac 180  Q
    |||||||||||||| || ||||| ||| |||||||| | |||||||||||||| ||||   ||||||||||||||||||||||||||||||||||||| |    
T  1200868 caagagcgggtaaagaccagatgcctttatgacattccagaaccaccccatagaagca---acatctggaggtaatgctgatttcaagtctattattcgc 1200964  T
Q  181 ttggcattgttaagcacctgatgtgtcttttcacgaccc-tgagaagaagaaaaaagcaaatataaattgttaaa 254  Q
    |||||||||||||||||| || |||| |||||||| ||| |||||  || |||||| ||||||||||||||||||    
T  1200965 ttggcattgttaagcacccgaggtgtgttttcacggcccttgaga--aaaaaaaaaccaaatataaattgttaaa 1201037  T

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Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 1200752 - 1200837
Alignment:
Q  1 tcatccaatgtgattgtcatttcacctacaggaaggtgaaaactactcgttcctgagtgccacctctctgagaaagcaatcaagag 86  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||| ||  ||||||||||||||||||||||||||||||||||    
T  1200752 tcatccaaggtgattgtcatttcacctacaggaagatgaaaactacttgtctctgagtgccacctctctgagaaagcaatcaagag 1200837  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 345 - 394
Target Start/End: Original strand, 25924250 - 25924299
Alignment:
Q  345 atgatgaattttaaaatgtctaatgtgtagatcactaattatcagtaaaa 394  Q
    |||||| ||||| ||||||||||||||||||||||||||||||| |||||    
T  25924250 atgatggattttgaaatgtctaatgtgtagatcactaattatcaataaaa 25924299  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 291
Target Start/End: Original strand, 25924162 - 25924201
Alignment:
Q  252 aaactattataaccaacagtcctacaccatatacctcacc 291  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  25924162 aaactattataactaacagtcttacaccatatacctcacc 25924201  T

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Target: chr6 (Bit Score: 114; Significance: 1e-57; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 81 - 308
Target Start/End: Original strand, 32688644 - 32688865
Alignment:
Q  81 caagagcgggtaaaaactagatggcttgatgacatttcggaaccaccccatagtagcagcaacatctggaggtaatgctgatttcaagtctattattcac 180  Q
    |||||||||||||| || ||||| | |||||||||| | |||||| |||||||   |||||||||||||||||||||||||||||||||||||||||| |    
T  32688644 caagagcgggtaaagaccagatgccctgatgacattccagaaccatcccatag---cagcaacatctggaggtaatgctgatttcaagtctattattcgc 32688740  T
Q  181 ttggcattgttaagcacctgatgtgtcttttcacgaccctgagaagaagaaaaaagcaaatataaattgtt-aaactattataaccaacagtcctacacc 279  Q
    ||| |||||||||||||| || |||| |||||||| ||||    |||| |||||||||||||||||||||| |||||||||||||||||||||||| ||     
T  32688741 ttgccattgttaagcacccgaggtgtgttttcacggccct----agaaaaaaaaagcaaatataaattgttaaaactattataaccaacagtcctaaaca 32688836  T
Q  280 atatacctcaccttgaggaagaaagtaaa 308  Q
    | |||||||||| |||| |||||||||||    
T  32688837 acatacctcaccctgagcaagaaagtaaa 32688865  T

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Target: chr6; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 81 - 254
Target Start/End: Original strand, 19811761 - 19811930
Alignment:
Q  81 caagagcgggtaaaaactagatggcttgatgacatttcggaaccaccccatagtagcagcaacatctggaggtaatgctgatttcaagtctattattcac 180  Q
    ||||||| |||||| || ||||| | | |||||||| | ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||| |    
T  19811761 caagagcaggtaaagaccagatgcccttatgacattccagaaccaccccatag---cagcaacatctggaggtaatgctgatttcaagtctattattcgc 19811857  T
Q  181 ttggcattgttaagcacctgatgtgtcttttcacgaccctgagaagaagaaaaaagcaaatataaattgttaaa 254  Q
    |||||||||||||||||| || |||| |||||||||||||||||| || |||||| ||||||||||||||||||    
T  19811858 ttggcattgttaagcacccgaggtgtgttttcacgaccctgagaa-aaaaaaaaaccaaatataaattgttaaa 19811930  T

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Target: chr6; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 81 - 254
Target Start/End: Original strand, 22520828 - 22521000
Alignment:
Q  81 caagagcgggtaaaaactagatggcttgatgacatttcggaaccaccccatagtagcagcaacatctggaggtaatgctgatttcaagtctattattcac 180  Q
    |||||||||||||| || ||||| | |||||||||| | ||||||||||||||   ||||||||| |||| ||||||||||||||||||||| ||||| |    
T  22520828 caagagcgggtaaagaccagatgccctgatgacattccagaaccaccccatag---cagcaacatttggaagtaatgctgatttcaagtctaatattcgc 22520924  T
Q  181 ttggcattgttaagcacctgatgtgtcttttcacgaccctgag--aagaagaaaaaagcaaatataaattgttaaa 254  Q
    ||||||||||||||||||||| |||| |||||||| || ||||  || || |||||| ||||||||||||||||||    
T  22520925 ttggcattgttaagcacctgaggtgtgttttcacggccttgagaaaaaaaaaaaaaaccaaatataaattgttaaa 22521000  T

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Target: chr6; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 19811645 - 19811730
Alignment:
Q  1 tcatccaatgtgattgtcatttcacctacaggaaggtgaaaactactcgttcctgagtgccacctctctgagaaagcaatcaagag 86  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||| ||  ||||||||||||||||||||||||||||||||||    
T  19811645 tcatccaaggtgattgtcatttcacctacaggaagatgaaaactacttgtctctgagtgccacctctctgagaaagcaatcaagag 19811730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 22520712 - 22520797
Alignment:
Q  1 tcatccaatgtgattgtcatttcacctacaggaaggtgaaaactactcgttcctgagtgccacctctctgagaaagcaatcaagag 86  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||  ||||||||||||||||| ||||||||||||||||    
T  22520712 tcatccaatgtgattgtcatttcacctacaggaagatgaaaactacttgtctctgagtgccacctctctaagaaagcaatcaagag 22520797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 32688528 - 32688613
Alignment:
Q  1 tcatccaatgtgattgtcatttcacctacaggaaggtgaaaactactcgttcctgagtgccacctctctgagaaagcaatcaagag 86  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||  ||||||||||||||  ||||||||||||||||||    
T  32688528 tcatccaaggcgattgtcatttcacctacaggaaggtgaaaactactcgtctctgagtgccacctcaatgagaaagcaatcaagag 32688613  T

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Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 81 - 308
Target Start/End: Complemental strand, 25207085 - 25206864
Alignment:
Q  81 caagagcgggtaaaaactagatggcttgatgacatttcggaaccaccccatagtagcagcaacatctggaggtaatgctgatttcaagtctattattcac 180  Q
    |||||||||||||| || ||||| | ||||||||||   ||||||||||| | |||||   |||||||||||||||||||||| |||||||||||||  |    
T  25207085 caagagcgggtaaacaccagatgccctgatgacattctagaaccaccccacaatagca---acatctggaggtaatgctgattccaagtctattatttgc 25206989  T
Q  181 ttggcattgttaagcacctgatgtgtcttttcacgaccctgagaagaagaaaaaagcaaatataaattgtt-aaactattataaccaacagtcctacacc 279  Q
    ||||||||||||||||||  | |||| |||||||| ||||||||  |||||||||  |||||||||||||| ||||||||||||||||||||| ||||||    
T  25206988 ttggcattgttaagcacccaaggtgtgttttcacgtccctgaga--aagaaaaaa--aaatataaattgttaaaactattataaccaacagtcttacacc 25206893  T
Q  280 atatacctcaccttgaggaagaaagtaaa 308  Q
    |||||||||||| ||||||||||| ||||    
T  25206892 atatacctcaccctgaggaagaaattaaa 25206864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 25207201 - 25207122
Alignment:
Q  1 tcatccaatgtgattgtcatttcacctacaggaaggtgaaaactactcgttcctgagtgccacctctctgagaaagcaat 80  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||  ||||||||||||| ||| ||||||||||    
T  25207201 tcatccaaggtgattttcatttcacctacaggaaggtgaaaactactcgtctctgagtgccacctatctaagaaagcaat 25207122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 18296833 - 18296918
Alignment:
Q  1 tcatccaatgtgattgtcatttcacctacaggaaggtgaaaactactcgttcctgagtgccacctctctgagaaagcaatcaagag 86  Q
    |||||||| ||||| ||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||    
T  18296833 tcatccaaggtgatagtcatttcacctacaggaaggtgaaaactgctcgtctctgagtgccacctctctgagaaagcaatcaagag 18296918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 80 - 198
Target Start/End: Original strand, 18296948 - 18297063
Alignment:
Q  80 tcaagagcgggtaaaaactagatggcttgatgacatttcggaaccaccccatagtagcagcaacatctggaggtaatgctgatttcaagtctattattca 179  Q
    ||||||||||||||| |||||||| | |||| ||||| |  ||||||||||||    || |||| || ||||||| || |  |||||||||||||||||     
T  18296948 tcaagagcgggtaaagactagatgccctgattacattccaaaaccaccccatat---catcaacctccggaggtagtgattctttcaagtctattattcg 18297044  T
Q  180 cttggcattgttaagcacc 198  Q
    |||||||||||||||||||    
T  18297045 cttggcattgttaagcacc 18297063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 47852268 - 47852353
Alignment:
Q  1 tcatccaatgtgattgtcatttcacctacaggaaggtgaaaactactcgttcctgagtgccacctctctgagaaagcaatcaagag 86  Q
    |||||||| ||||| ||||||||||||||||||||||||||||| |||||  |  |||||||||| ||||||||||||||||||||    
T  47852268 tcatccaaggtgatagtcatttcacctacaggaaggtgaaaactgctcgtctccaagtgccacctatctgagaaagcaatcaagag 47852353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 47852385 - 47852498
Alignment:
Q  82 aagagcgggtaaaaactagatggcttgatgacatttcggaaccaccccatagtagcagcaacatctggaggtaatgctgatttcaagtctattattcact 181  Q
    ||||||||||||| || ||||| | |||| ||||| |  ||||||||||||    || |||| |||||||||||||||  ||||||||||||||||| ||    
T  47852385 aagagcgggtaaagaccagatgccctgattacattccaaaaccaccccatat---catcaacctctggaggtaatgcttctttcaagtctattattcgct 47852481  T
Q  182 tggcattgttaagcacc 198  Q
    |||||||||||||||||    
T  47852482 tggcattgttaagcacc 47852498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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