View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13010_low_5 (Length: 408)
Name: NF13010_low_5
Description: NF13010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13010_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 389
Target Start/End: Original strand, 12095449 - 12095817
Alignment:
| Q |
19 |
tattactattattttaacacattttcttataaatgccccatgttatatgaggccgataaatgtgtaaccgagtgagtactaattactcacttacaaggag |
118 |
Q |
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| T |
12095449 |
tattactattattttaacacattttcttataaatgccccatgttatatgaggccgataaatgtgtaaccgattgagtactaatt--tcacttacaaggag |
12095546 |
T |
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| Q |
119 |
gcccgttcttgagcaagcgctaagagctctatggagccgggacggccctgcttacaaggaggcaaaggagaaccacacaagcccttattatgcgaaaatg |
218 |
Q |
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| T |
12095547 |
gccctttcttgagcaagtgcgaagagctctatggagccgggacggccctgcttacaaggaggcaaaggagaaccacacaagcccttattatgcgaaaacg |
12095646 |
T |
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| Q |
219 |
acgatggatcaaactcttgcaacttccctccaactgtcggtataggaccggaaagctggttgtagctcacattgaagtcgtacaacaatgacgcttggcc |
318 |
Q |
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| T |
12095647 |
acgatggatcaaactcttgcaacttccctccaactgtcggtataggaccgaaaagctggttgtagctcacattgaagtcgtacaacaatgacgcttggcc |
12095746 |
T |
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| Q |
319 |
taaccaagctggcaactttccgtatatcatgttattttccaaccgtaagaccagcaaattcgagtccagtt |
389 |
Q |
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| T |
12095747 |
taaccaagctggcaactttccgtatatcatgttattttccaaccgtaagacaagcaaattcgattccagtt |
12095817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 169 - 389
Target Start/End: Original strand, 12078957 - 12079177
Alignment:
| Q |
169 |
cttacaaggaggcaaaggagaaccacacaagcccttattatgcgaaaatgacgatggatcaaactcttgcaacttccctccaactgtcggtataggaccg |
268 |
Q |
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| T |
12078957 |
cttacaagggggcaaaggagaaccacacaaacacttattatgcgaaaacgacgatggatcaaacccttgcaacttccctccgactgtcggtataggacca |
12079056 |
T |
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| Q |
269 |
gaaagctggttgtagctcacattgaagtcgtacaacaatgacgcttggcctaaccaagctggcaactttccgtatatcatgttattttccaaccgtaaga |
368 |
Q |
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|||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| |||| |
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| T |
12079057 |
caaagttggttgttgctcacattgaagtcatacaacaatgacgcttggcctaaccaagctggcaactttccatatataaggttattttccaaccgcaaga |
12079156 |
T |
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| Q |
369 |
ccagcaaattcgagtccagtt |
389 |
Q |
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| T |
12079157 |
ccagcaaattcgagtccagtt |
12079177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 29 - 116
Target Start/End: Original strand, 12078878 - 12078965
Alignment:
| Q |
29 |
attttaacacattttcttataaatgccccatgttatatgaggccgataaatgtgtaaccgagtgagtactaattactcacttacaagg |
116 |
Q |
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||||||||||||||||||| ||||| ||||||| | ||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
12078878 |
attttaacacattttcttacaaatgacccatgtcaaatgaggctgataaatgtgtaaccgagagagtactaattactcacttacaagg |
12078965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 290
Target Start/End: Complemental strand, 1249247 - 1249176
Alignment:
| Q |
219 |
acgatggatcaaactcttgcaacttccctccaactgtcggtataggaccggaaagctggttgtagctcacat |
290 |
Q |
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| T |
1249247 |
acgacggatcaaacccttgcaacttccctccatcctttggtataggaccacaaagctggttgtggctcacat |
1249176 |
T |
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