View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13010_low_7 (Length: 360)
Name: NF13010_low_7
Description: NF13010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13010_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 493800 - 494124
Alignment:
| Q |
18 |
catttcaaaccttgcagcctcactaattatctctctcaatgttacaccgctctctaccgtcattctcaacaatttgacatcgactttcaacacacggttg |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
493800 |
catttcaaaccttgcagcctcactgattatctctctcaatgttacaccgctctctaccgtcattctcaacaatttgacatcgactttcaacacacggttg |
493899 |
T |
|
| Q |
118 |
agattttttgtgcttattagaagtccattatcatcgggacaagctagttttggtatgctgtgagagaagcgcgttgcaactttcacttttctgctgtttt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
493900 |
agattttttgtgcttattagaagtccattatcatcgggacaagctagttttggtatgctgtgagagaagcgcgttgcaactttcacttttctgttgtttt |
493999 |
T |
|
| Q |
218 |
ttgaagctaacgcgactattgatataagctccgtctcagtggttgggtacataacctcgctagctctgcaaatgcttcgatcgggaaacacgccatttga |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
494000 |
ttgaagctaacgcgactattgatataagctccgcctcagtggttgggtacataacctcgctagctctgcaaatgcttcgatcggggaacacgccatttga |
494099 |
T |
|
| Q |
318 |
attggtgatggtgcagtttgtatta |
342 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
494100 |
attggtgatggtgcagtttgtatta |
494124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 29 - 338
Target Start/End: Complemental strand, 49013754 - 49013436
Alignment:
| Q |
29 |
ttgcagcctcactaattatctctctcaatgttacaccgctctctaccgtcattctcaacaatttgacatcgactttcaacacacggttgagattttttgt |
128 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| ||||| |||||||| | ||| ||| | ||||| | |||||||||| ||||||| |||||| |
|
|
| T |
49013754 |
ttgcagcctcactaatgatctgtctcaatgtcacaccactctctacacttattgtcattgcatccacatcaattttcaacacattgttgagaaattttgt |
49013655 |
T |
|
| Q |
129 |
gcttattagaagtccatt---------atcatcgggacaagctagttttggtatgctgtgagagaagcgcgttgcaactttcacttttctgctgtttttt |
219 |
Q |
| |
|
||||| ||||||||||| |||||| ||||||| ||| ||||| |||||||| ||||||||||| |||||||||| ||||||| |||||| | |
|
|
| T |
49013654 |
gcttaccagaagtccattttgggtatcatcatcaggacaagttagctttggaatgctgtgggagaagcgcgtcgcaactttcatttttctgttgttttct |
49013555 |
T |
|
| Q |
220 |
gaagctaacgcgactattgatataagctccgtctcagtggttgggtacataacctcgctagctctgcaaatgcttcgatcgggaaacacgccatttgaat |
319 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| | |||||| |||| ||||||||||||| ||||||||||| | || || ||| ||||||| |||| |
|
|
| T |
49013554 |
gaagctaacgcgactattgatataagctctacctctgaggttggatacacaacctcgctagctttgcaaatgctttggtcagggaacgcgccattggaat |
49013455 |
T |
|
| Q |
320 |
tggtgatggtgcagtttgt |
338 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
49013454 |
tcgtgatggtgcagtttgt |
49013436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University