View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13010_low_8 (Length: 348)

Name: NF13010_low_8
Description: NF13010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13010_low_8
NF13010_low_8
[»] chr2 (5 HSPs)
chr2 (11-348)||(20980220-20980560)
chr2 (254-348)||(20967397-20967491)
chr2 (24-165)||(20967502-20967643)
chr2 (8-121)||(20699551-20699664)
chr2 (87-143)||(20975382-20975438)
[»] scaffold0649 (1 HSPs)
scaffold0649 (149-218)||(5181-5250)
[»] chr7 (4 HSPs)
chr7 (84-121)||(14076541-14076578)
chr7 (84-121)||(14386569-14386606)
chr7 (87-129)||(16846654-16846696)
chr7 (81-130)||(15572094-15572143)
[»] chr8 (1 HSPs)
chr8 (39-122)||(27618336-27618419)
[»] chr6 (1 HSPs)
chr6 (81-130)||(6921534-6921583)
[»] chr5 (1 HSPs)
chr5 (85-121)||(18965021-18965057)


Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 11 - 348
Target Start/End: Complemental strand, 20980560 - 20980220
Alignment:
Q  11 cacagaaacaattggcataacaggcggtacttcatcgaatccccgaggaggcagcaactgtgtgtacgagtctgtccccaaatcaagagagataatcaca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  20980560 cacagaaacaattggcataacaggcggtacttcatcgaatccccgaggaggcagcaactgtgtgtacgagtctgtccccaaatcaagagaggtaatcaca 20980461  T
Q  111 aattgctcaatactaagattaagatccttccattcattataaccaaagttat---tgccaagggcaaaccaattgagactattacacaaatagacaccac 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||   ||| || |||||||||||| |||||||||||||||||||||||||    
T  20980460 aattgctcaatactaagattaagatccttccattcattataaccaacgttattgctgcgaatggcaaaccaattaagactattacacaaatagacaccac 20980361  T
Q  208 cattctgatcccatccgttggtattcaaacgagtacatcgaaaaggaagcagagggaatctttgaataattctccaaaatttatcacccagagtgaaaac 307  Q
    ||||  |||||||| | || ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20980360 catttcgatcccattcatttgtattcgtacgagtacatcgaaaaggaagcagagggaatctttgaataattctccaaaatttatcaccaagagtgaaaac 20980261  T
Q  308 tctcacctcgacagaactgaatgccaccaccttatattttc 348  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  20980260 tctcacctcgacggaactgaatgccaccaccttatattttc 20980220  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 254 - 348
Target Start/End: Complemental strand, 20967491 - 20967397
Alignment:
Q  254 aagcagagggaatctttgaataattctccaaaatttatcacccagagtgaaaactctcacctcgacagaactgaatgccaccaccttatattttc 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||    
T  20967491 aagcagagggaatctttgaataattctccaaaatttatcacccagagtgaaaactctgacttctacagaactgaatgccaccaccttatattttc 20967397  T

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Target: chr2; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 20967643 - 20967502
Alignment:
Q  24 ggcataacaggcggtacttcatcgaatccccgaggaggcagcaactgtgtgtacgagtctgtccccaaatcaagagagataatcacaaattgctcaatac 123  Q
    ||||||||| | || ||||||| ||| ||||||||||| ||||| |||||||| |  ||||||||||||||||| || || |||||||||||||||| |     
T  20967643 ggcataacatgtggcacttcattgaaaccccgaggaggaagcaattgtgtgtaggtctctgtccccaaatcaagggaaatgatcacaaattgctcaacag 20967544  T
Q  124 taagattaagatccttccattcattataaccaaagttattgc 165  Q
    ||| ||||||||||||||||||||||||||||| ||||||||    
T  20967543 taacattaagatccttccattcattataaccaacgttattgc 20967502  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 20699551 - 20699664
Alignment:
Q  8 cagcacagaaacaattggcataacaggcggtacttcatcgaatccccgaggaggcagcaactgtgtgtacgagtctgtccccaaatcaagagagataatc 107  Q
    |||||| |||||||||||||||| | | || |||||||| ||  | |||||||| ||||  || ||||| |  ||||| ||||||||||| |||||||||    
T  20699551 cagcacggaaacaattggcataaaaagtggcacttcatcaaaatctcgaggagggagcatttgcgtgtaagtctctgttcccaaatcaagtgagataatc 20699650  T
Q  108 acaaattgctcaat 121  Q
    |||||||| |||||    
T  20699651 acaaattgatcaat 20699664  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 20975438 - 20975382
Alignment:
Q  87 cccaaatcaagagagataatcacaaattgctcaatactaagattaagatccttccat 143  Q
    ||||||||||| ||||||||||||||||  |||| ||||| | ||||||| ||||||    
T  20975438 cccaaatcaagtgagataatcacaaattcatcaacactaacaataagatctttccat 20975382  T

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Target: scaffold0649 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0649
Description:

Target: scaffold0649; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 5250 - 5181
Alignment:
Q  149 ataaccaaagttattgccaagggcaaaccaattgagactattacacaaatagacaccaccattctgatcc 218  Q
    |||| ||| |||||||| ||||| ||||||||| ||||| ||||  ||||||||||||||||||||||||    
T  5250 ataaacaatgttattgcaaagggtaaaccaattaagactgttactaaaatagacaccaccattctgatcc 5181  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 14076578 - 14076541
Alignment:
Q  84 gtccccaaatcaagagagataatcacaaattgctcaat 121  Q
    |||||||||||||| |||||||||||||||||||||||    
T  14076578 gtccccaaatcaagtgagataatcacaaattgctcaat 14076541  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 14386606 - 14386569
Alignment:
Q  84 gtccccaaatcaagagagataatcacaaattgctcaat 121  Q
    |||||||||||||| |||||||||||||||||||||||    
T  14386606 gtccccaaatcaagtgagataatcacaaattgctcaat 14386569  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 129
Target Start/End: Original strand, 16846654 - 16846696
Alignment:
Q  87 cccaaatcaagagagataatcacaaattgctcaatactaagat 129  Q
    |||||||||||||| ||||||||||||||||||| | ||||||    
T  16846654 cccaaatcaagagaaataatcacaaattgctcaacagtaagat 16846696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 15572094 - 15572143
Alignment:
Q  81 tctgtccccaaatcaagagagataatcacaaattgctcaatactaagatt 130  Q
    ||||||||||||||||| ||||| ||||||||||| |||||  |||||||    
T  15572094 tctgtccccaaatcaagcgagattatcacaaattgttcaatcgtaagatt 15572143  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 27618419 - 27618336
Alignment:
Q  39 acttcatcgaatccccgaggaggcagcaactgtgtgtacgagtctgtccccaaatcaagagagataatcacaaattgctcaata 122  Q
    ||||||| ||| ||||||||||| |||||||||||||  |  || || | ||||||||| || |||||||||||||| ||||||    
T  27618419 acttcattgaaaccccgaggaggaagcaactgtgtgtgtgtctcagtactcaaatcaagcgaaataatcacaaattgatcaata 27618336  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 6921534 - 6921583
Alignment:
Q  81 tctgtccccaaatcaagagagataatcacaaattgctcaatactaagatt 130  Q
    ||||||||||||||||| ||||| ||||||||||| |||| | |||||||    
T  6921534 tctgtccccaaatcaagtgagatcatcacaaattgttcaacaataagatt 6921583  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 18965021 - 18965057
Alignment:
Q  85 tccccaaatcaagagagataatcacaaattgctcaat 121  Q
    |||||| |||||| |||||||||||||||||||||||    
T  18965021 tccccagatcaagtgagataatcacaaattgctcaat 18965057  T

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