View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13011_low_5 (Length: 352)

Name: NF13011_low_5
Description: NF13011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13011_low_5
NF13011_low_5
[»] chr1 (9 HSPs)
chr1 (118-344)||(23915210-23915428)
chr1 (1-116)||(23915070-23915185)
chr1 (30-116)||(23922748-23922834)
chr1 (31-108)||(25803201-25803278)
chr1 (118-181)||(23922872-23922935)
chr1 (200-268)||(23922954-23923022)
chr1 (30-81)||(5253011-5253062)
chr1 (27-101)||(24436233-24436307)
chr1 (30-93)||(23989853-23989916)
[»] chr5 (2 HSPs)
chr5 (5-110)||(35079756-35079864)
chr5 (16-110)||(35074798-35074892)
[»] chr4 (1 HSPs)
chr4 (5-92)||(13435800-13435887)


Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 118 - 344
Target Start/End: Original strand, 23915210 - 23915428
Alignment:
Q  118 tgaggagaatgaagaagagacgttacttagggttcttaatttataggcattatgatgcagtaccnnnnnnnnaaggacttcactcagtcaaaataagtca 217  Q
    ||||||||||| |||| ||||||||    |||||||||||||||||||||||| ||||||||||        ||||||||||||||||||||||||||||    
T  23915210 tgaggagaatggagaatagacgtta----gggttcttaatttataggcattataatgcagtaccttttttttaaggacttcactcagtcaaaataagtca 23915305  T
Q  218 atgaatgtagtcagaaagaaattcattcaccattaatattcttggttttttgttagtaactcagttcataccagtaatgacgtactatgacgaggtgcga 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23915306 atgaatgtagtcagaaagaaattcattcaccattaatattcttggttttttgttagtaactcagttcataccagtaatgacgtactatgacgaggtgcga 23915405  T
Q  318 ctcatgcatgcatatcgttttcatttc 344  Q
    ||    |||||||||||||||||||||    
T  23915406 ct----catgcatatcgttttcatttc 23915428  T

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Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 23915070 - 23915185
Alignment:
Q  1 tttgcatacattttggtacaacttgaggcttggtgttggtgaattggcatgggaaataaagatcattgaaatggtgagcaaaatggataaataagttgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23915070 tttgcatacattttggtacaacttgaggcttggtgttggtgaattggcatgggaaataaagatcattgaaatggtgagcaaaatggataaataggttgaa 23915169  T
Q  101 gatgccattttctctt 116  Q
    ||||||||||||||||    
T  23915170 gatgccattttctctt 23915185  T

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Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 23922748 - 23922834
Alignment:
Q  30 ttggtgttggtgaattggcatgggaaataaagatcattgaaatggtgagcaaaatggataaataagttgaagatgccattttctctt 116  Q
    |||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  23922748 ttggtgttggtgaaatggcatgagaaacaaagatcattgaaatggtgagcaaaatggataaataggctgaagatgccattttctctt 23922834  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 25803201 - 25803278
Alignment:
Q  31 tggtgttggtgaattggcatgggaaataaagatcattgaaatggtgagcaaaatggataaataagttgaagatgccat 108  Q
    ||||||||||||| | ||||| |||||||| ||||||||||||||||||||||  |||||||| ||||||| ||||||    
T  25803201 tggtgttggtgaaatagcatgagaaataaacatcattgaaatggtgagcaaaaatgataaatatgttgaaggtgccat 25803278  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 118 - 181
Target Start/End: Original strand, 23922872 - 23922935
Alignment:
Q  118 tgaggagaatgaagaagagacgttacttagggttcttaatttataggcattatgatgcagtacc 181  Q
    |||||||| || |||||||||||||||||||||||||||| |||||||||||| ||| ||||||    
T  23922872 tgaggagagtggagaagagacgttacttagggttcttaatatataggcattataatgtagtacc 23922935  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 268
Target Start/End: Original strand, 23922954 - 23923022
Alignment:
Q  200 ctcagtcaaaataagtcaatgaatgtagtcagaaagaaattcattcaccattaatattcttggtttttt 268  Q
    |||| ||||||| ||| |||||||||||||||||| ||||  | |||||||||||||||||||||||||    
T  23922954 ctcaatcaaaatgagttaatgaatgtagtcagaaacaaataaagtcaccattaatattcttggtttttt 23923022  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 5253062 - 5253011
Alignment:
Q  30 ttggtgttggtgaattggcatgggaaataaagatcattgaaatggtgagcaa 81  Q
    |||||||||||||| ||||||| |||||| ||||||||||||||||||||||    
T  5253062 ttggtgttggtgaaatggcatgagaaatagagatcattgaaatggtgagcaa 5253011  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 24436233 - 24436307
Alignment:
Q  27 ggcttggtgttggtgaattggcatgggaaataaagatcattgaaatggtgagcaaaatggataaataagttgaag 101  Q
    |||||| |||||||||| |||| || ||||||||||||||||| ||||||||||| | ||||| ||| |||||||    
T  24436233 ggcttgatgttggtgaaatggcgtgagaaataaagatcattgatatggtgagcaataaggatagatatgttgaag 24436307  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 23989916 - 23989853
Alignment:
Q  30 ttggtgttggtgaattggcatgggaaataaagatcattgaaatggtgagcaaaatggataaata 93  Q
    |||||||||||||| ||||||| ||||||||| ||||||| |||||||| || | |||||||||    
T  23989916 ttggtgttggtgaaatggcatgagaaataaagttcattgagatggtgagtaacaaggataaata 23989853  T

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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 5 - 110
Target Start/End: Original strand, 35079756 - 35079864
Alignment:
Q  5 catacattttggtacaacttgaggcttggtgttggt---gaattggcatgggaaataaagatcattgaaatggtgagcaaaatggataaataagttgaag 101  Q
    |||||| ||| |||||||||| ||||||||||||||   ||| ||||||||||||||||||||||||||||   |||||||| ||||||| ||| |||||    
T  35079756 catacacttttgtacaacttggggcttggtgttggtagtgaaatggcatgggaaataaagatcattgaaataacgagcaaaacggataaacaagctgaag 35079855  T
Q  102 atgccattt 110  Q
     ||||||||    
T  35079856 gtgccattt 35079864  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 35074798 - 35074892
Alignment:
Q  16 gtacaacttgaggcttggtgttggtgaattggcatgggaaataaagatcattgaaatggtgagcaaaatggataaataagttgaagatgccattt 110  Q
    |||||||||  |||||||||||||||||  ||||||  |||||||||||||||||||  |||  |||| |||||| || ||||||| ||||||||    
T  35074798 gtacaacttagggcttggtgttggtgaaagggcatgacaaataaagatcattgaaataatgataaaaaaggataagtatgttgaaggtgccattt 35074892  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 13435887 - 13435800
Alignment:
Q  5 catacattttggtacaacttgaggcttggtgttggtgaattggcatgggaaataaagatcattgaaatggtgagcaaaatggataaat 92  Q
    |||||| ||| |||||| ||  |||||| |||| ||||| |||| || ||||||||||||||||| ||||||||||| | ||||||||    
T  13435887 catacacttttgtacaaattagggcttgatgttcgtgaaatggcgtgagaaataaagatcattgatatggtgagcaataaggataaat 13435800  T

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