View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13012_low_1 (Length: 489)

Name: NF13012_low_1
Description: NF13012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13012_low_1
NF13012_low_1
[»] chr7 (2 HSPs)
chr7 (16-227)||(43442018-43442229)
chr7 (325-482)||(43441763-43441920)
[»] chr4 (4 HSPs)
chr4 (16-225)||(36846068-36846287)
chr4 (325-482)||(26630205-26630362)
chr4 (325-482)||(36845812-36845968)
chr4 (16-205)||(26630469-26630640)
[»] chr8 (5 HSPs)
chr8 (325-482)||(31845342-31845499)
chr8 (16-205)||(31845062-31845235)
chr8 (407-481)||(43202502-43202576)
chr8 (325-420)||(43202749-43202843)
chr8 (18-75)||(43202916-43202973)
[»] chr1 (2 HSPs)
chr1 (325-482)||(48527932-48528088)
chr1 (86-227)||(48528184-48528329)
[»] chr5 (2 HSPs)
chr5 (325-468)||(1103037-1103174)
chr5 (54-220)||(1103277-1103444)


Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 43442229 - 43442018
Alignment:
Q  16 tgagagactcgagtgggaaagagaaagagaagatgaagaggtgtttaaagaggggaaaaacaccggttgctgtttgacaacgcagtggttgtctgagaac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  43442229 tgagagactcgagtgggaaagagaaagagaagatgaagaggtgtttaaagaggggaaaaacgccggttgctgtttgacaacgcagtggttgtgtgagaac 43442130  T
Q  116 ggtggtggccgttgtttgtagaggaaggattggtttccgtcttactgaactacattgcattatttgacttttttcccttgtttaaattaaaattaaacaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43442129 ggtggtggccgttgtttgtagaggaaggattggtttccgtcttactgaactacattgcattatttgacttttttcccttgtttaaattaaaattaaacaa 43442030  T
Q  216 tactgagtttgc 227  Q
    || |||||||||    
T  43442029 tattgagtttgc 43442018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 325 - 482
Target Start/End: Complemental strand, 43441920 - 43441763
Alignment:
Q  325 acgtaaggagaatttgtggttgttattgatttgggagtggaactggattttgaaatttttcttctttttccttaaactgactgtgtgtttgataatggag 424  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||    
T  43441920 acgtaaggagaatttgtggttgttattgatttggaagtggaactggattttgaatttttttttctttttccttaaattgactgtgtgtttgataatggag 43441821  T
Q  425 atgagttttaattgaattaatggtgtttggaattgatagaaatccatggtgatgatgt 482  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  43441820 atgagttttaattgaattagtggtgtttggaattgatagaaatccatggtgatgatgt 43441763  T

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Target: chr4 (Bit Score: 144; Significance: 2e-75; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 36846287 - 36846068
Alignment:
Q  16 tgagagactcgagtgggaaagagaaagagaagatgaagaggtgtttaaagaggggaaaaacaccggttgctgtttgacaacgcagtggttgtctgagaac 115  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||  | ||||||||||||||||||||||||||| |||||||    
T  36846287 tgagagactcgagtgggaaagagaaagagaagatgaagagatgtttaaagagggaaaaaacgtcagttgctgtttgacaacgcagtggttgtgtgagaac 36846188  T
Q  116 ggtggtggccg---------ttgtttgtagaggaaggattggtttccgtcttactgaactacattgcattatttgac-ttttttcccttgtttaaattaa 205  Q
    |||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||    
T  36846187 ggtggtggccgttgtggccgttgtttgtagaggaaggattggtttccgtcttactgaactacattgcattatttgacttttttttccctgtttaaattaa 36846088  T
Q  206 aattaaacaatactgagttt 225  Q
    ||||||||||| ||||||||    
T  36846087 aattaaacaattctgagttt 36846068  T

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Target: chr4; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 325 - 482
Target Start/End: Complemental strand, 26630362 - 26630205
Alignment:
Q  325 acgtaaggagaatttgtggttgttattgatttgggagtggaactggattttgaaatttttcttctttttccttaaactgactgtgtgtttgataatggag 424  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26630362 acgtaaggagaatttgtggttgttattgatttgggggtggaactgaattttgaaatttttcttctttttccttaaactgactgtgtgtttgatgatggag 26630263  T
Q  425 atgagttttaattgaattaatggtgtttggaattgatagaaatccatggtgatgatgt 482  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  26630262 atgagttttaattgaattagtggtgtttggaattgatagaaatcgatggtgatgatgt 26630205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 325 - 482
Target Start/End: Complemental strand, 36845968 - 36845812
Alignment:
Q  325 acgtaaggagaatttgtggttgttattgatttgggagtggaactggattttgaaatttttcttctttttccttaaactgactgtgtgtttgataatggag 424  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36845968 acgtaaggagaatttgtggttgttattgatttgg-agtggaactggattttgaaatttttcttctttttccttaaactgactatgtgtttgataatggag 36845870  T
Q  425 atgagttttaattgaattaatggtgtttggaattgatagaaatccatggtgatgatgt 482  Q
    ||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||    
T  36845869 atgagttttaattgaattagtgatgtttgtaattgatagaaatccatggtgatgatgt 36845812  T

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Target: chr4; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 26630640 - 26630469
Alignment:
Q  16 tgagagactcgagtgggaaagagaaagagaagatgaagaggtgtttaaagaggggaaaaacaccggttgctgtttgacaacgcagtggttgtctgagaac 115  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||                   |||||| |||||||    
T  26630640 tgagagacttgagtgggaaagagaaagagaagatgaagaggtgtttaaagaggggaaaaacgccggt-------------------ggttgtgtgagaac 26630560  T
Q  116 ggtggtggccgttgtttgtagaggaaggattggtttccgtcttactgaactacattgcattatttgactt-ttttcccttgtttaaattaa 205  Q
    |||||||||||||||||||||||||||||||||||| ||||||   |||| ||||||||||||||||||| |||| |||||||||||||||    
T  26630559 ggtggtggccgttgtttgtagaggaaggattggttttcgtcttgtagaacaacattgcattatttgacttttttttccttgtttaaattaa 26630469  T

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Target: chr8 (Bit Score: 126; Significance: 9e-65; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 325 - 482
Target Start/End: Original strand, 31845342 - 31845499
Alignment:
Q  325 acgtaaggagaatttgtggttgttattgatttgggagtggaactggattttgaaatttttcttctttttccttaaactgactgtgtgtttgataatggag 424  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  31845342 acgtaaggagaatctgtggttgttattgatttgagagtggaactgaattttgaaatttttcttcttttttcttaaactgactgtgtgtttgatgatggag 31845441  T
Q  425 atgagttttaattgaattaatggtgtttggaattgatagaaatccatggtgatgatgt 482  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||    
T  31845442 atgagttttaattgaattagtggtgtttggaattgatagaaatcgatggtgataatgt 31845499  T

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Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 31845062 - 31845235
Alignment:
Q  16 tgagagactcgagtgggaaagagaaagagaagatgaagaggtgtttaaagaggggaaaaacaccggttgctgtttgacaacgcagtggttgtctgagaac 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||                   |||||| |||||||    
T  31845062 tgagagactcgagtgggaaagagaaagagaagatgaagaggtgtttaaagaggggaaaaacgtcggt-------------------ggttgtgtgagaac 31845142  T
Q  116 ggtggtggccgttgtttgtagaggaaggattggtttccgtcttactgaactacattgcattatttgac---ttttttcccttgtttaaattaa 205  Q
    |||||||||||||||||| |||||||||||||||||||||||||  |||| |||||||||||||||||   |||||||| |||||||||||||    
T  31845143 ggtggtggccgttgtttgcagaggaaggattggtttccgtcttatagaacaacattgcattatttgactttttttttccattgtttaaattaa 31845235  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 407 - 481
Target Start/End: Complemental strand, 43202576 - 43202502
Alignment:
Q  407 gtgtgtttgataatggagatgagttttaattgaattaatggtgtttggaattgatagaaatccatggtgatgatg 481  Q
    |||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||    
T  43202576 gtgtctttgataatggtgatgagttttaattgaattaatggtgtatggaattgatagaaatcgatgatgatgatg 43202502  T

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Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 325 - 420
Target Start/End: Complemental strand, 43202843 - 43202749
Alignment:
Q  325 acgtaaggagaatttgtggttgttattgatttgggagtggaactggattttgaaatttttcttctttttccttaaactgactgtgtgtttgataat 420  Q
    |||||||||||||||| ||||||||||||||| ||||||| |||||||||| ||||||  ||||| ||| |||||| |||| ||||||||||||||    
T  43202843 acgtaaggagaatttggggttgttattgatttaggagtgggactggatttttaaatttcccttctattt-cttaaattgaccgtgtgtttgataat 43202749  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 43202973 - 43202916
Alignment:
Q  18 agagactcgagtgggaaagagaaagagaagatgaagaggtgtttaaagaggggaaaaa 75  Q
    ||||| |||||||||||||||||  |||| | ||||||||||||| |||||| |||||    
T  43202973 agagattcgagtgggaaagagaagaagaaaacgaagaggtgtttacagagggaaaaaa 43202916  T

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Target: chr1 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 325 - 482
Target Start/End: Complemental strand, 48528088 - 48527932
Alignment:
Q  325 acgtaaggagaatttgtggttgttattgatttgggagtggaactggattttgaaatttttcttctttttccttaaactgactgtgtgtttgataatggag 424  Q
    ||||||||| |||||| |||||||| | |||||||||||| |||| ||||||||||||  |||||||| |||||||||||| |||||||||||||||| |    
T  48528088 acgtaaggaaaatttggggttgttaataatttgggagtgggactgaattttgaaatttcccttctttt-ccttaaactgaccgtgtgtttgataatggtg 48527990  T
Q  425 atgagttttaattgaattaatggtgtttggaattgatagaaatccatggtgatgatgt 482  Q
    ||||||||||||||||||| ||| ||| |||||||||||||||| | |||||||||||    
T  48527989 atgagttttaattgaattagtggggttaggaattgatagaaatcaacggtgatgatgt 48527932  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 86 - 227
Target Start/End: Complemental strand, 48528329 - 48528184
Alignment:
Q  86 tgtttgacaacgcag-tggttgtctgagaacggtggtggccgttgtttgtagaggaaggattggtttccgtcttactgaactacattgcat--tatttga 182  Q
    ||||||||||||| | ||||||| ||||||||||||||||    |||||||||||||||||||||||||||||||  |||| |||||||||  |||||||    
T  48528329 tgtttgacaacgccggtggttgtgtgagaacggtggtggcgagagtttgtagaggaaggattggtttccgtcttatagaacaacattgcattatatttga 48528230  T
Q  183 c-ttttttcccttgtttaaattaaaattaaacaatactgagtttgc 227  Q
    | |||||| ||||||||||||||||||||||||||||||| |||||    
T  48528229 cttttttttccttgtttaaattaaaattaaacaatactgaatttgc 48528184  T

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Target: chr5 (Bit Score: 64; Significance: 9e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 325 - 468
Target Start/End: Complemental strand, 1103174 - 1103037
Alignment:
Q  325 acgtaaggagaatttgtggttgttattgatttgggagtggaactggattttgaaatttttcttctttttccttaaactgactgtgtgtttgataatggag 424  Q
    |||||||||||||||| |||||||| | |||||||||||| |||| ||||||||||||  |||| ||||||||||| || | |||||||||||||||       
T  1103174 acgtaaggagaatttggggttgttaataatttgggagtgggactgaattttgaaatttcccttc-ttttccttaaagtggccgtgtgtttgataatg--- 1103079  T
Q  425 atgagttttaattgaattaatggtgtttggaattgatagaaatc 468  Q
      | ||||||||||||||| |||||||||||||||| |||||||    
T  1103078 --gtgttttaattgaattagtggtgtttggaattgacagaaatc 1103037  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 54 - 220
Target Start/End: Complemental strand, 1103444 - 1103277
Alignment:
Q  54 aggtgtttaaagaggggaaaaacaccggttgctgtttgacaacgcagtggttgtctgagaacggtggtggccgttgtttgtagaggaaggattggtttcc 153  Q
    ||||||||| ||| || ||||||  |||| | ||||||||||||| |  ||||| ||||||||||||||||    ||||||||||||||||||||||||     
T  1103444 aggtgtttagagatggaaaaaacgtcggtggttgtttgacaacgccg--gttgtgtgagaacggtggtggcgagagtttgtagaggaaggattggtttc- 1103348  T
Q  154 gtcttactgaactacattgcattat--ttgacttttttc--ccttgtttaaattaaaattaaacaatactg 220  Q
    ||||||  |||| ||||||||||||  |||||||||||   ||||||||||||||||||||||||||||||    
T  1103347 gtcttatagaacaacattgcattatatttgactttttttttccttgtttaaattaaaattaaacaatactg 1103277  T

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