View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13012_low_2 (Length: 424)
Name: NF13012_low_2
Description: NF13012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13012_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 3e-92; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 103 - 278
Target Start/End: Complemental strand, 35048656 - 35048481
Alignment:
| Q |
103 |
ccctttggtcatgtatgattgccaatggcattgttgcctaatgtcacaagagggataaggggtttccattctagccctccataccctatttcctaatcca |
202 |
Q |
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| T |
35048656 |
ccctttggtcatgtatgattgccaatggcattgttgcctaatgtcacaagagggataaggggtttccattctagccctccataccctatgtcctaatcca |
35048557 |
T |
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| Q |
203 |
cacctacatcacattaaagtgtctcttactttacctaaaaaaggaagaaaatgatgcatgactttaatgtgtattt |
278 |
Q |
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| T |
35048556 |
cacctacatcacattaaagtgtctcttactttacctaaaaaaggaagaaaatgatgcatgactttaatgtgtattt |
35048481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 35048713 - 35048646
Alignment:
| Q |
16 |
atgtgctgggtggagagcagaattctatattcaatatatcttggataatttatctccccctttggtca |
83 |
Q |
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| T |
35048713 |
atgtgctgggtggagagcagaattctatattcaatatatcttggataatttatctccccctttggtca |
35048646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 347 - 408
Target Start/End: Complemental strand, 35048485 - 35048424
Alignment:
| Q |
347 |
tatttgtaacattagaaggatatcatcagttttttatttataagatttaatttgtatacatc |
408 |
Q |
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| T |
35048485 |
tatttgtaacattagaaggatatcatcatttttttatttataagatttaatttgtatacatc |
35048424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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