View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13012_low_4 (Length: 267)
Name: NF13012_low_4
Description: NF13012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13012_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 10970887 - 10971137
Alignment:
| Q |
1 |
cctgaaaacgtgcctaatggatttggtgcaacttatgtaatggatgatgaaatcactgaagggcctgaaatgagttcaaagcacattggaagagcacaag |
100 |
Q |
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| T |
10970887 |
cctgaaaacgtgcctaatggatttggtgcaacttatgtaatggatgatgaaatcactgaagggcctgaaatgagttcaaagcacattggaagagcacaag |
10970986 |
T |
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| Q |
101 |
ggttgtttggtcaagcttctctgcatgatattggaatgtttatgttgacaaattttattttcacagagggaaactatgcagggagcacacttagcatgtt |
200 |
Q |
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| T |
10970987 |
ggttgtttggtcaagcttctctgcatgatattggaatgtttatgttgacaaattttattttcacagagggaaactatgcagggagcacacttagcatgtt |
10971086 |
T |
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| Q |
201 |
agggaggaatcctgttgctgaacaaaatagagaaatgccaatagttggtgg |
251 |
Q |
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| T |
10971087 |
agggaggaatcctgttgctgaacaaaatagagaaatggcaatagttggtgg |
10971137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 4 - 251
Target Start/End: Complemental strand, 30509717 - 30509470
Alignment:
| Q |
4 |
gaaaacgtgcctaatggatttggtgcaacttatgtaatggatgatgaaatcactgaagggcctgaaatgagttcaaagcacattggaagagcacaagggt |
103 |
Q |
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| T |
30509717 |
gaaaacgtgcctaatggatttggtgcaacttatgtaatggatgatgaaatcactgaagggccagaaatgagttcaaagcacattggaagagcacaagggt |
30509618 |
T |
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| Q |
104 |
tgtttggtcaagcttctctgcatgatattggaatgtttatgttgacaaattttattttcacagagggaaactatgcagggagcacacttagcatgttagg |
203 |
Q |
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| T |
30509617 |
tgtttggtcaagcttctctgcatgatattggaatgtttatgttgacaaattttattttcacagatggaaactatgcagggagcacacttagcatgttagg |
30509518 |
T |
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| Q |
204 |
gaggaatcctgttgctgaacaaaatagagaaatgccaatagttggtgg |
251 |
Q |
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| T |
30509517 |
gaggaatcctgttgctgaacaaaatagagaaatgccaatagttggtgg |
30509470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 13703005 - 13702950
Alignment:
| Q |
196 |
atgttagggaggaatcctgttgctgaacaaaatagagaaatgccaatagttggtgg |
251 |
Q |
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| T |
13703005 |
atgttgggaaggaatcctatttctgaacaaaatagagaaatgcctattgttggtgg |
13702950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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