View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13012_low_5 (Length: 266)
Name: NF13012_low_5
Description: NF13012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13012_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 10970809 - 10970683
Alignment:
| Q |
1 |
tttctgaaggtaaatatatgttggattgttttgagaacactccatttgttgaagttgattgagtaaaaattatatttagagagaagagaaataataaact |
100 |
Q |
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| T |
10970809 |
tttctgaaggtaaatatatgttggattgttttgagaacactccatttgttgaagttgattgagtaaaaattatatttagagagaagagaaataataaact |
10970710 |
T |
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| Q |
101 |
acgtgaaataagagccattttgatgaa |
127 |
Q |
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| T |
10970709 |
acgtgaaataagagccattttgatgaa |
10970683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 124 - 252
Target Start/End: Complemental strand, 10970639 - 10970508
Alignment:
| Q |
124 |
tgaacaacgaaagagacatca---ctctttaatagtttttcctggaatggaatgaattattacccacgttcatcgcgaggaatataaaaaatgttattta |
220 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10970639 |
tgaacaacgaaagagacatcatcactctttaatagtttttcctggaatggaatgaattattacccacgttcatcgcgaggaatataaaaaatgttattta |
10970540 |
T |
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| Q |
221 |
aagtactatttcatctttttgtccctacctcc |
252 |
Q |
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| T |
10970539 |
aagtactatttcatctttttgtccctacctcc |
10970508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 30509798 - 30509924
Alignment:
| Q |
1 |
tttctgaaggtaaatatatgttggattgttttgagaacactccatttgttgaagttgattgagtaaaaattatatttagagagaagagaaataataaact |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30509798 |
tttctgagggtaaatatatgttggattgttttgagaacactccatttgttgaagttgattgagtaaaaattatatttagagagaagagaaataatgaact |
30509897 |
T |
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| Q |
101 |
acgtgaaataagagccattttgatgaa |
127 |
Q |
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| T |
30509898 |
acgtgaaataagagccattttgatgaa |
30509924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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