View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13012_low_6 (Length: 228)
Name: NF13012_low_6
Description: NF13012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13012_low_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 53659062 - 53659282
Alignment:
| Q |
7 |
aacaaggatattttttaggggtgaaacatgtggatgtggcatttgttttagaattccttatggtcccaaaggacctcctgctgatgtggcatttaatttg |
106 |
Q |
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| T |
53659062 |
aacaaggatattttttaggggtgaaacatgtggatgtggcatttgttttagaattccttatg-tcccaaaggacctcctgctgatgtggcatttaatttg |
53659160 |
T |
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| Q |
107 |
attttaatagaaaaatatattttaaataatctagtttatgaattattaatgattttgcagtgnnnnnnnnnnnnnnnnnntaacatttaaattattgatt |
206 |
Q |
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| T |
53659161 |
attttaatagaaaaatatattttaaataatctaatttatgaattagtaatgattttgcagtgaaaaaaatgtaaaaaaaataacatttaaattattaatt |
53659260 |
T |
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| Q |
207 |
ttcaaatgacattcatcatctc |
228 |
Q |
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| T |
53659261 |
ttcaaatgacattcatcatctc |
53659282 |
T |
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