View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13013_high_10 (Length: 325)
Name: NF13013_high_10
Description: NF13013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13013_high_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 40639490 - 40639797
Alignment:
| Q |
1 |
tccaccctccatcaactatggttatgaaaataataaattccctcaaagagtaccttgtcgtgcaaaagaagacaagaacccctgactgtggaattgataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40639490 |
tccaccctccatcaactatggttatgaaaataataaattccctcaaagagtaccttgtcgtgcaaaagaagacaagaacccctgactgtggaattgataa |
40639589 |
T |
|
| Q |
101 |
attagaatggattaatatgaaatgaataggaactcttgattgaattggtactcccttgaaatgaatttgccaccattgatgagctatcatgactaatgca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40639590 |
attagaatggattaatatgaaatgaataggaactcttgattgaattggtactcccttgaaatgaatttgccacaattgatgagctatcatgactaatgca |
40639689 |
T |
|
| Q |
201 |
gatggataaaacgcttattatttattttgttaataatataaagtactta-nnnnnnngctaataatataaaacacttctattatgaataggttttccctt |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
40639690 |
gatggataaaacgcttattatttattttgttaataatataaagtacttattttttttgctaatgatataaaacacttctattatgaataggttttccctt |
40639789 |
T |
|
| Q |
300 |
ttattatc |
307 |
Q |
| |
|
|||||||| |
|
|
| T |
40639790 |
ttattatc |
40639797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 40643579 - 40643659
Alignment:
| Q |
27 |
aaaataataaattccctcaaagagtaccttgtcgtgcaaaagaagacaagaacccctgactgtggaattgataaattagaa |
107 |
Q |
| |
|
|||| ||||||| |||||||||| | |||||||||||||||||||||||||||||| ||| || |||||||||||||||| |
|
|
| T |
40643579 |
aaaaaaataaatcccctcaaagaatctcttgtcgtgcaaaagaagacaagaacccctcactctgaaattgataaattagaa |
40643659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 211
Target Start/End: Original strand, 40643671 - 40643736
Alignment:
| Q |
146 |
tggtactcccttgaaatgaatttgccaccattgatgagctatcatgactaatgcagatggataaaa |
211 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
40643671 |
tggtactcccttggaatgaattggccacaattgatgagatatcatgactaatgtagatggataaaa |
40643736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University