View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13013_high_3 (Length: 456)
Name: NF13013_high_3
Description: NF13013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13013_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 7077598 - 7077825
Alignment:
| Q |
17 |
agaaagaagggttatttcatagttttgatgataggtcctatgacaaaaatgttagttgggttaagagttaatattccttctaatatttctttaataaata |
116 |
Q |
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| T |
7077598 |
agaaagaagggttatttcatagttttgatgataggtcctatgacaaaaatgttagttgggttaagagttgatattccttctaatatttctttaataaata |
7077697 |
T |
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| Q |
117 |
ctcatctcattgttgtacaatataacatgaagattatgtgtacaatagttggtgaaatatcgggtttgtgtactgttctgtcattttgaacttgactatg |
216 |
Q |
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| T |
7077698 |
ctcctctcattgttgtacaatataacatgaagattatgtgtacaatagttggtgaaatatcgggtttgtgtactgttctgtcattttgaacttgactatg |
7077797 |
T |
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| Q |
217 |
gttatgatgatttggtgtaaaacaaaac |
244 |
Q |
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| T |
7077798 |
gttatgatgatttggtgtaaaacaaaac |
7077825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 292 - 450
Target Start/End: Complemental strand, 8814658 - 8814500
Alignment:
| Q |
292 |
ttgtgcaggttcaaagttagatgctagtccaaggcttgattctaatactttcactttgtgttggtgttgtatcttcttagctttcagtggtgttctgttt |
391 |
Q |
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| T |
8814658 |
ttgtgcaggttcaaagttagatgctagtccaaggcttgattctaagactttcactttgtgttggtgttgtatcttcttagcttctagtggtgttctggtt |
8814559 |
T |
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| Q |
392 |
tgttgttctttatttcaattttctgtttaggatgtggtactgtgctgggtctgtgctgc |
450 |
Q |
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| T |
8814558 |
tgttgttctttaattcaattttctgtttaggatgtggtactgtgctgggtctttgctgc |
8814500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 278 - 434
Target Start/End: Original strand, 21964446 - 21964598
Alignment:
| Q |
278 |
gaatccaaccttgattgtgcaggttcaaagttagatgctagtccaaggcttgattctaatactttcactttgtgttggtgttgtatcttcttagctttca |
377 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||| || |
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| T |
21964446 |
gaatccaagcttgattgtgcaggttcagagttagatgctagtccatggcttgattctaagactttcactttgtgttggtgttgtatctccttagcttcca |
21964545 |
T |
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| Q |
378 |
gtggtgttctgttttgttgttcttta-tttcaattttctgtttaggatgtggtactgt |
434 |
Q |
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| T |
21964546 |
atcg-----tgttttgttgttctttattttgagttttctgtttagcatgtggtactgt |
21964598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 415
Target Start/End: Original strand, 23379793 - 23379904
Alignment:
| Q |
308 |
ttagatgctagtccaaggcttgattctaatactttcactttgtgtt-ggtgttgtatcttcttagctttc----agtggtgttctgttttgttgttcttt |
402 |
Q |
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||||||||||||||| |||||||| |||| | | || ||||||||| |||||||| ||| |||||||| | | ||||||| |||||||||||||||| |
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| T |
23379793 |
ttagatgctagtccatggcttgatgctaagaatgtc-ctttgtgtttggtgttgtctctccttagcttccttccaatggtgttttgttttgttgttcttt |
23379891 |
T |
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| Q |
403 |
atttcaattttct |
415 |
Q |
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|||| ||||||| |
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| T |
23379892 |
atttagattttct |
23379904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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