View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13013_high_4 (Length: 392)
Name: NF13013_high_4
Description: NF13013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13013_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 13 - 377
Target Start/End: Original strand, 5939713 - 5940077
Alignment:
| Q |
13 |
gagatgaacttcatagaatgctaagtgaggttagtagcttttaatagtctagtaatttatgtaatacatgcttttcctttcaacataaaagtaaaatatt |
112 |
Q |
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| T |
5939713 |
gagatgaacttcatagaatgctaagtgaggttagtagcttttaattgtctagtaatttatgtaatacatgcttttcctttcaacataaaagtaaaatatt |
5939812 |
T |
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| Q |
113 |
gttgcaatcatattaataaacatttacattgtaggatgaacttcgtgatgccactttacttgtatttgccaataagcaagatcttccaaatgctttgagt |
212 |
Q |
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| T |
5939813 |
gttgcaatcatattaataaacatttacattgtaggatgaacttcgtgatgccactttacttgtatttgccaataagcaagatcttccaaatgctttgagt |
5939912 |
T |
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| Q |
213 |
gtttcagaaattactgataaacttggtttacattcacttcgccagcgtcgttggtaagtcatgttttaattacaacgaatcattagccgaagcttgaaat |
312 |
Q |
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| T |
5939913 |
gtttcagaaattactgataaacttggtttacattcacttcgccagcgtcgttggtaagtcatgttttaattacaacgaatcattagccgaagcttgaaat |
5940012 |
T |
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| Q |
313 |
catagattgaaacttcaaatttgaattacatcataatccaaagctgagttcagggtggttttgat |
377 |
Q |
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| T |
5940013 |
catagattgaaacttcaaatttgaattacatcataatccaaagttgagttcagggtggttttgat |
5940077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 261
Target Start/End: Complemental strand, 45053426 - 45053336
Alignment:
| Q |
171 |
cttgtatttgccaataagcaagatcttccaaatgctttgagtgtttcagaaattactgataaacttggtttacattcacttcgccagcgtc |
261 |
Q |
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| T |
45053426 |
cttgtttttgcaaacaagcaagatcttccaaatgctatgaatgctgctgaaataactgataagctaggtcttcattcacttcgtcagcgtc |
45053336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 238
Target Start/End: Original strand, 950333 - 950426
Alignment:
| Q |
145 |
aggatgaacttcgtgatgccactttacttgtatttgccaataagcaagatcttccaaatgctttgagtgtttcagaaattactgataaacttgg |
238 |
Q |
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| T |
950333 |
aggatgaacttagagatgctgttttgcttgtttttgccaacaaacaagatcttccaaatgcaatgaatgctgcagaaataactgacaaacttgg |
950426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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