View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13013_high_6 (Length: 385)
Name: NF13013_high_6
Description: NF13013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13013_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 11 - 367
Target Start/End: Complemental strand, 30898360 - 30898004
Alignment:
| Q |
11 |
atcatcaccagatgacgaggtttgagccgcttgctttgctgaagatactttccttctcttactactttcttctccacttgaaacagttcctcctgtggat |
110 |
Q |
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| T |
30898360 |
atcatcaccagatgacgaggtttgagccgcttgctttgccgaagatactttccttctcttactactttcttctccacttgaaacagttcctcctgtggat |
30898261 |
T |
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| Q |
111 |
tttgagacttgagaacgagagctcactgttgcaaaatcactctacatcagtttgttagataaagcataagtatccttctttgctcatcataaagtgcaaa |
210 |
Q |
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| T |
30898260 |
tttgagacttgagaacgagagctcactgttgcaaaatcactctacatcagtttgttagataaagcataagtatccttctttgctcatcataaagtgcaaa |
30898161 |
T |
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| Q |
211 |
actcttttcttctttctttttggggtttcgaactttgtatcttaaatcagttcccttctccagaatccttttcgtagaccttggctaagcttagaccacc |
310 |
Q |
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| T |
30898160 |
actcttttcttctttctttttggggtttcgaactttgtatcttaaatcagttcccttctccagaatccttttcgtagaccttggctaagcttagaccacc |
30898061 |
T |
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| Q |
311 |
tcctgggaggggcaggtatctgtagacaaatgtccattgaaaagaggttagacatac |
367 |
Q |
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| T |
30898060 |
tcctgggaggggcaggtatctgtagacaaatgtccattgaaaagaggttagacatac |
30898004 |
T |
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