View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13013_high_9 (Length: 330)
Name: NF13013_high_9
Description: NF13013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13013_high_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 102 - 288
Target Start/End: Complemental strand, 31026403 - 31026205
Alignment:
| Q |
102 |
ctcacatcttatattactttggcatatttaaaatatcat--gtgaggtttcagtgttaaaactaattaaaccatcatctaaattgtaagtttataattgg |
199 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31026403 |
ctcacatcttatattactttcgcatatttaaaatatcatatgtgaggttttagtgttaaaactaattaaagcatcatctaaattgtaagtttataattgg |
31026304 |
T |
|
| Q |
200 |
cag----------gacgaaattctaaattgtttggttcccttcactcatactagacaaatttaaataatttagaattttctatgcttcattcattggtt |
288 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31026303 |
cagtttaggacttgacaaaattctaaattgtttggttcccttcactcatactagacaaatttgaataatttagaattttctatgcttcattcattggtt |
31026205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University