View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13013_low_1 (Length: 538)

Name: NF13013_low_1
Description: NF13013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13013_low_1
NF13013_low_1
[»] chr4 (18 HSPs)
chr4 (18-234)||(36935758-36935975)
chr4 (277-455)||(36935970-36936148)
chr4 (237-431)||(35097655-35097856)
chr4 (237-401)||(35072826-35072997)
chr4 (237-401)||(35106863-35107034)
chr4 (237-431)||(36940621-36940821)
chr4 (119-238)||(35097881-35098000)
chr4 (119-238)||(35098170-35098289)
chr4 (237-428)||(36961217-36961403)
chr4 (119-233)||(35072682-35072796)
chr4 (237-401)||(36296599-36296770)
chr4 (120-238)||(36940478-36940596)
chr4 (237-338)||(35098037-35098145)
chr4 (118-233)||(35107064-35107179)
chr4 (119-230)||(36296455-36296566)
chr4 (105-238)||(36953624-36953762)
chr4 (286-401)||(35072042-35072157)
chr4 (122-198)||(36961469-36961545)
[»] chr6 (4 HSPs)
chr6 (239-401)||(24014327-24014496)
chr6 (237-401)||(24040882-24041053)
chr6 (118-233)||(24040737-24040852)
chr6 (119-230)||(24014181-24014292)
[»] chr1 (1 HSPs)
chr1 (289-431)||(3123046-3123188)
[»] chr5 (3 HSPs)
chr5 (286-398)||(26578963-26579075)
chr5 (175-238)||(34919157-34919220)
chr5 (138-238)||(26579156-26579256)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 36935758 - 36935975
Alignment:
Q  18 aaaattacaaaacacattacatgattttccttcatacacacagtagacaaaacacatgcaagcaaagaacatcattctaacatggaactcgattagtatc 117  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36935758 aaaattaaaaaacacattacatgattttccttcatacacacagtacacaaaacacatgcaagcaaagaacatcattctaacatggaactcgattagtatc 36935857  T
Q  118 taaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattctcc-gttgcagctttcacttga 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||    
T  36935858 taaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttgtggcacggtaacagtgagaacaccattctccaattgcagctttcacttga 36935957  T
Q  217 tccattttagcattctca 234  Q
    ||||||||||||||||||    
T  36935958 tccattttagcattctca 36935975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 277 - 455
Target Start/End: Original strand, 36935970 - 36936148
Alignment:
Q  277 ttctcatttctctctccgcttatctgaagaaccctatcatcttcaatctctactttcacttcctccttcttcattcctggaagatccgccttgaacacat 376  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36935970 ttctcatttctctctccgcttatctgaagaaccatatcatcttcaatctctactttcacttcctccttcttcattcctggaagatccgccttgaacacat 36936069  T
Q  377 gtgcttctggggtctccttccaatccacacgtgtgctcaggaatgcagaattctctcagtgacatcttctcttcaattt 455  Q
     | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36936070 ctacttctggggtctccttccaatccacacgtgtgctcaggaatgcagaattctctcagtgacatcttctcttcaattt 36936148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 237 - 431
Target Start/End: Complemental strand, 35097856 - 35097655
Alignment:
Q  237 cactgctacgctccacgcgatgccattgatcgttcttatcttct-------catttctctctccgcttatctgaagaaccctatcatcttcaatctctac 329  Q
    |||||||||||||||| |||||||||||||||||||||||||||       |||| |||||||||||||||||||||||||||||| ||||||| || ||    
T  35097856 cactgctacgctccacacgatgccattgatcgttcttatcttctttctcaacattcctctctccgcttatctgaagaaccctatcaccttcaatttcaac 35097757  T
Q  330 tttcacttcctccttcttcattcctggaagatccgccttgaacacatgtgcttctggggtctccttccaatccacacgtgtgctcaggaatgcagaattc 429  Q
     |||||||| |||||||||| ||| |||||||| |||| ||||||||||||||||||||||||||||||||||||  |||||||    ||||||||||||    
T  35097756 cttcacttcttccttcttcagtccaggaagatcagcctcgaacacatgtgcttctggggtctccttccaatccacttgtgtgcttgcaaatgcagaattc 35097657  T
Q  430 tc 431  Q
    ||    
T  35097656 tc 35097655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 237 - 401
Target Start/End: Original strand, 35072826 - 35072997
Alignment:
Q  237 cactgctacgctccacgcgatgccattgatcgttcttatcttct----ca---tttctctctccgcttatctgaagaaccctatcatcttcaatctctac 329  Q
    |||||||||||||||| |||||||||||||| ||||||||||||    ||   || ||||| |||||||||||||||||||||||||||||||| || ||    
T  35072826 cactgctacgctccacacgatgccattgatcattcttatcttctttttcaatgttcctctcaccgcttatctgaagaaccctatcatcttcaatttcaac 35072925  T
Q  330 tttcacttcctccttcttcattcctggaagatccgccttgaacacatgtgcttctggggtctccttccaatc 401  Q
     ||||||||||||||||||| ||| |||||||| |||||||||||||| |||||||||||||||||||||||    
T  35072926 cttcacttcctccttcttcagtccaggaagatcagccttgaacacatgagcttctggggtctccttccaatc 35072997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 237 - 401
Target Start/End: Complemental strand, 35107034 - 35106863
Alignment:
Q  237 cactgctacgctccacgcgatgccattgatcgttcttatcttct----ca---tttctctctccgcttatctgaagaaccctatcatcttcaatctctac 329  Q
    |||||||||||||||| |||||||||||||| ||||||||||||    ||   || ||||| |||||||||||||||||||||||||||||||| || ||    
T  35107034 cactgctacgctccacacgatgccattgatcattcttatcttctttttcaaagttcctctcaccgcttatctgaagaaccctatcatcttcaatttcaac 35106935  T
Q  330 tttcacttcctccttcttcattcctggaagatccgccttgaacacatgtgcttctggggtctccttccaatc 401  Q
     ||||||||||||||||||| ||| |||||||| |||||||||||||| |||||||||||||||||||||||    
T  35106934 cttcacttcctccttcttcagtccaggaagatcagccttgaacacatgagcttctggggtctccttccaatc 35106863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 237 - 431
Target Start/End: Original strand, 36940621 - 36940821
Alignment:
Q  237 cactgctacgctccacgcgatgccattgatcgttcttatcttct-------catttctctctccgcttatctgaagaaccctatcatcttcaatctctac 329  Q
    ||||||||||||||||| ||||||||||||||||||||||||||       |  |||| | ||| |||||||||||||||||||||||||||||||||||    
T  36940621 cactgctacgctccacgggatgccattgatcgttcttatcttctttctcaacgcttctttttccacttatctgaagaaccctatcatcttcaatctctac 36940720  T
Q  330 tttcacttcctccttcttcattcctggaagatccgccttgaacacatgtgcttctggggtctccttccaatccacacgtgtgctcaggaatgcagaattc 429  Q
    |||| |||||||||||||||||||||||| ||| || |||||||| |||||| | || |||| ||||||||||||| |||||||||  ||||||||| ||    
T  36940721 tttcgcttcctccttcttcattcctggaaaatcagcattgaacacgtgtgctccaggagtct-cttccaatccacatgtgtgctcacaaatgcagaactc 36940819  T
Q  430 tc 431  Q
    ||    
T  36940820 tc 36940821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 119 - 238
Target Start/End: Complemental strand, 35098000 - 35097881
Alignment:
Q  119 aaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattctccgttgcagctttcacttgatc 218  Q
    |||||||||| ||||||| ||| || ||||||||||| | |||||||||||| || |||||||||||||||||||||||| |||||||||||||||| ||    
T  35098000 aaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttggtc 35097901  T
Q  219 cattttagcattctcaggca 238  Q
    |||||| |||||||||||||    
T  35097900 cattttcgcattctcaggca 35097881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 119 - 238
Target Start/End: Complemental strand, 35098289 - 35098170
Alignment:
Q  119 aaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattctccgttgcagctttcacttgatc 218  Q
    |||||||||| ||||||| ||| || ||||||||||| | |||||||||||| || |||||||||||||||||||||||| |||||||||||||||| ||    
T  35098289 aaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttggtc 35098190  T
Q  219 cattttagcattctcaggca 238  Q
    |||||| |||||||||||||    
T  35098189 cattttcgcattctcaggca 35098170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 237 - 428
Target Start/End: Complemental strand, 36961403 - 36961217
Alignment:
Q  237 cactgctacgctccacgcgatgccattgatcgttcttatcttct-------catttctctctccgcttatctgaagaaccctatcatcttcaatctctac 329  Q
    |||||||| ||||||||| |||||||| || |||||||||||||       |  ||||||||||||| |||||||||||||||||| |||||||||||||    
T  36961403 cactgctaagctccacgcaatgccattcattgttcttatcttctttctcaacgcttctctctccgctgatctgaagaaccctatcaacttcaatctctac 36961304  T
Q  330 tttcacttcctccttcttcattcctggaagatccgccttgaacacatgtgcttctggggtctccttccaatccacacgtgtgctcaggaatgcagaatt 428  Q
                |||||||||||| |||||||||||||||||||| || |||||| | ||||||||||||||||||||||||||||||||||| |||||    
T  36961303 ------------cttcttcattcccggaagatccgccttgaacacgtgcgcttctcgagtctccttccaatccacacgtgtgctcaggaatgctgaatt 36961217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 119 - 233
Target Start/End: Original strand, 35072682 - 35072796
Alignment:
Q  119 aaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattctccgttgcagctttcacttgatc 218  Q
    |||||||||| || |||| ||| || ||||| |||||||| ||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||    
T  35072682 aaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgatc 35072781  T
Q  219 cattttagcattctc 233  Q
    |||||| ||||||||    
T  35072782 cattttcgcattctc 35072796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 237 - 401
Target Start/End: Original strand, 36296599 - 36296770
Alignment:
Q  237 cactgctacgctccacgcgatgccattgatcgttcttatcttct-------catttctctctccgcttatctgaagaaccctatcatcttcaatctctac 329  Q
    |||||||||||||||||||||||||||| | |||||| ||||||       | || |||||||| || ||||||||||| || ||||||||||| || ||    
T  36296599 cactgctacgctccacgcgatgccattggttgttcttgtcttctttctcaacgttcctctctccactaatctgaagaactctgtcatcttcaatttcaac 36296698  T
Q  330 tttcacttcctccttcttcattcctggaagatccgccttgaacacatgtgcttctggggtctccttccaatc 401  Q
     |||||||| |||||||||| ||| |||||||| || || ||||| ||||||||||||||||||||||||||    
T  36296699 cttcacttcttccttcttcagtccaggaagatcagctttaaacacgtgtgcttctggggtctccttccaatc 36296770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 120 - 238
Target Start/End: Original strand, 36940478 - 36940596
Alignment:
Q  120 accagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattctccgttgcagctttcacttgatcc 219  Q
    |||||||||||||||||| || |||||| | ||||| | ||||| ||| ||||| || ||||||||||  ||||||||| |||||||||||| |||||||    
T  36940478 accagagatatcaatggttttaacttcatgattcttgatctcttttttaggcacagtgacagtgagaatgccattctccattgcagctttcatttgatcc 36940577  T
Q  220 attttagcattctcaggca 238  Q
    |||||||||||||||||||    
T  36940578 attttagcattctcaggca 36940596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 237 - 338
Target Start/End: Complemental strand, 35098145 - 35098037
Alignment:
Q  237 cactgctacgctccacgcgatgccattgatcgttcttatcttct-------catttctctctccgcttatctgaagaaccctatcatcttcaatctctac 329  Q
    |||||||||||||||| |||||||||||||||||||||||||||       |||| |||||||||||||||||||||||||||||| ||||||| || ||    
T  35098145 cactgctacgctccacacgatgccattgatcgttcttatcttctttctcaacattcctctctccgcttatctgaagaaccctatcaccttcaatttcaac 35098046  T
Q  330 tttcacttc 338  Q
     ||||||||    
T  35098045 cttcacttc 35098037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 118 - 233
Target Start/End: Complemental strand, 35107179 - 35107064
Alignment:
Q  118 taaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattctccgttgcagctttcacttgat 217  Q
    ||||||||||| |||||||  || |||||||||||||| | |||||| || || || || |||| |||||||||||||||| | ||||||||||||||||    
T  35107179 taaccagagatttcaatggctttgacttcaggcttcttgatctcttccttagggacagtgacagcgagaacaccattctccatagcagctttcacttgat 35107080  T
Q  218 ccattttagcattctc 233  Q
    ||||||| ||||||||    
T  35107079 ccattttcgcattctc 35107064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 119 - 230
Target Start/End: Original strand, 36296455 - 36296566
Alignment:
Q  119 aaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattctccgttgcagctttcacttgatc 218  Q
    |||||||||| ||||| | ||| || ||||| |||||||| ||||||||||| || || ||||||||||||||||||||| ||||||||||||| |||||    
T  36296455 aaccagagatctcaatagacttaacatcaggtttcttaacttcttcttttggaacagttacagtgagaacaccattctccattgcagctttcacctgatc 36296554  T
Q  219 cattttagcatt 230  Q
    ||| || |||||    
T  36296555 catcttggcatt 36296566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 105 - 238
Target Start/End: Original strand, 36953624 - 36953762
Alignment:
Q  105 ctcgattagtatctaaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattc--------t 196  Q
    ||||||||||||| |||| | |||||||||| |||||||||||||||||| |||||||||||| || || || |||  |||||||||||||        |    
T  36953624 ctcgattagtatc-aacctgggatatcaatgttcttcacttcaggcttctaaacctcttctttaggaacagttaca--gagaacaccattctccatcagt 36953720  T
Q  197 ccgttgcagctttcacttgatccattttagcattctcaggca 238  Q
    || |||||||||||||||||||| |||||||||| |||||||    
T  36953721 ccattgcagctttcacttgatccgttttagcattgtcaggca 36953762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 286 - 401
Target Start/End: Original strand, 35072042 - 35072157
Alignment:
Q  286 ctctctccgcttatctgaagaaccctatcatcttcaatctctactttcacttcctccttcttcattcctggaagatccgccttgaacacatgtgcttctg 385  Q
    ||||||||  |||||||||| || ||  ||||||||| ||| |||||||||||||| || ||||  ||||| | ||| || ||||| ||||| |||||||    
T  35072042 ctctctcctgttatctgaagcactcttccatcttcaacctcaactttcacttcctctttgttcagccctggtacatcagctttgaatacatgggcttctg 35072141  T
Q  386 gggtctccttccaatc 401  Q
    | || |||||||||||    
T  35072142 gagtttccttccaatc 35072157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 36961545 - 36961469
Alignment:
Q  122 cagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattctcc 198  Q
    ||||||||||||||||||| ||| |||| || || || ||||| || || |  || |||||||||||||||||||||    
T  36961545 cagagatatcaatggtcttaactccaggttttttcacttcttccttaggaatagttacagtgagaacaccattctcc 36961469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 1e-51; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 239 - 401
Target Start/End: Original strand, 24014327 - 24014496
Alignment:
Q  239 ctgctacgctccacgcgatgccattgatcgttcttatcttct-------catttctctctccgcttatctgaagaaccctatcatcttcaatctctactt 331  Q
    ||||| |||||||| |||||||||||||||||||||||||||       |||| |||||||||||||||||||||||||||||| ||||||| || || |    
T  24014327 ctgctgcgctccacacgatgccattgatcgttcttatcttctttctcaacattcctctctccgcttatctgaagaaccctatcaccttcaatttcaacct 24014426  T
Q  332 tcacttcctccttcttcattcctggaagatccgccttgaacacatgtgcttctggggtctccttccaatc 401  Q
    |||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  24014427 tcacttcctccttcttcagtccaggaagatcagccttgaacacatgtgcttctggggtctccttccaatc 24014496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 237 - 401
Target Start/End: Original strand, 24040882 - 24041053
Alignment:
Q  237 cactgctacgctccacgcgatgccattgatcgttcttatcttct-------catttctctctccgcttatctgaagaaccctatcatcttcaatctctac 329  Q
    |||||||||||||||| |||||||||||||| ||||||||||||       | || ||||| |||||||||||||||||||||||||||||||| || ||    
T  24040882 cactgctacgctccacacgatgccattgatcattcttatcttctttttcaacgttcctctcaccgcttatctgaagaaccctatcatcttcaatttcaac 24040981  T
Q  330 tttcacttcctccttcttcattcctggaagatccgccttgaacacatgtgcttctggggtctccttccaatc 401  Q
     |||||||| |||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  24040982 cttcacttcttccttcttcagtccaggaagatcagccttgaacacatgtgcttctggggtctccttccaatc 24041053  T

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Target: chr6; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 118 - 233
Target Start/End: Original strand, 24040737 - 24040852
Alignment:
Q  118 taaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattctccgttgcagctttcacttgat 217  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||| || || || || |||||||||| |||||||||| ||||||||||||||||||    
T  24040737 taaccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaataccattctccattgcagctttcacttgat 24040836  T
Q  218 ccattttagcattctc 233  Q
    ||||||| ||||||||    
T  24040837 ccattttcgcattctc 24040852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 119 - 230
Target Start/End: Original strand, 24014181 - 24014292
Alignment:
Q  119 aaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattctccgttgcagctttcacttgatc 218  Q
    |||||||||| || |||| ||| || ||||| |||||||| ||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||    
T  24014181 aaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgatc 24014280  T
Q  219 cattttagcatt 230  Q
    |||||| |||||    
T  24014281 cattttcgcatt 24014292  T

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Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 289 - 431
Target Start/End: Complemental strand, 3123188 - 3123046
Alignment:
Q  289 tctccgcttatctgaagaaccctatcatcttcaatctctactttcacttcctccttcttcattcctggaagatccgccttgaacacatgtgcttctgggg 388  Q
    ||||||||||||||||||||| ||||||||||||| || || ||||| || ||||||||||  ||||||||||| || |||||||||||||||||| | |    
T  3123188 tctccgcttatctgaagaaccttatcatcttcaatttcaaccttcacctcttccttcttcaaccctggaagatcagctttgaacacatgtgcttctagag 3123089  T
Q  389 tctccttccaatccacacgtgtgctcaggaatgcagaattctc 431  Q
    | ||||| || ||||| | ||||||||  ||||| ||||||||    
T  3123088 tttcctttcagtccactcttgtgctcacaaatgcggaattctc 3123046  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 398
Target Start/End: Complemental strand, 26579075 - 26578963
Alignment:
Q  286 ctctctccgcttatctgaagaaccctatcatcttcaatctctactttcacttcctccttcttcattcctggaagatccgccttgaacacatgtgcttctg 385  Q
    |||||||| |||||||  | ||| | ||| ||||||||||| || |||||||||||||||||||  || |||||||| || ||||| |  |||||||| |    
T  26579075 ctctctccacttatcttcaaaacacgatcctcttcaatctcaaccttcacttcctccttcttcacgccgggaagatcggctttgaagatgtgtgcttccg 26578976  T
Q  386 gggtctccttcca 398  Q
    | || ||||||||    
T  26578975 gtgtttccttcca 26578963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 34919220 - 34919157
Alignment:
Q  175 gtaacagtgagaacaccattctccgttgcagctttcacttgatccattttagcattctcaggca 238  Q
    |||||||| ||||| ||||||||| |  ||||||| || |||||||||||| ||||||||||||    
T  34919220 gtaacagtaagaaccccattctccataccagctttaacctgatccattttaacattctcaggca 34919157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 26579256 - 26579156
Alignment:
Q  138 cttcacttcaggcttcttaacctcttcttttggcacggtaacagtgagaacaccattctccgttgcagctttcacttgatccattttagcattctcaggc 237  Q
    |||||| |||||||||||||||||  | || || ||  ||||||| || |||||||||||| |  |||||||||| | |||||  ||||||||||| |||    
T  26579256 cttcacatcaggcttcttaacctccaccttaggaacactaacagtaagcacaccattctccatcccagctttcacctcatccaccttagcattctccggc 26579157  T
Q  238 a 238  Q
    |    
T  26579156 a 26579156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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