View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13013_low_12 (Length: 250)
Name: NF13013_low_12
Description: NF13013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13013_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 1034927 - 1035171
Alignment:
| Q |
1 |
tgcaaagggaatttcaggcaaatgaggttgtaaacaaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagcctcagcaaaatatct |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1034927 |
tgcaaagggaatttcaggcaaatgaggttgtaagcaaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagtctcagcaaaatatct |
1035026 |
T |
|
| Q |
101 |
tgaagatctatggcaacatttttcttcaatgataattctaagactggtatgagcctattgttcacaagctcaaaaattgactcaattgttaactttctaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1035027 |
tgaagatctatggcaacatttttcttcaatgataattctaagactggtatgagcctattgttcacaagctcaaaaattgactcatttgttaactttctaa |
1035126 |
T |
|
| Q |
201 |
aatttgtcgaatgaaactcgatactagctattttcctttgcttct |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1035127 |
aatttgtcgaatgaaactcgatactagctattttcctttgtttct |
1035171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 2 - 245
Target Start/End: Original strand, 13897871 - 13898114
Alignment:
| Q |
2 |
gcaaagggaatttcaggcaaatgaggttgtaaacaaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagcctcagcaaaatatctt |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
13897871 |
gcaaagggaatttcaggcaaatgaggttgtaaacaaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatctt |
13897970 |
T |
|
| Q |
102 |
gaagatctatggcaacatttttcttcaatgataattctaagactggtatgagcctattgttcacaagctcaaaaattgactcaattgttaactttctaaa |
201 |
Q |
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| T |
13897971 |
gaagatctattgcaacatttttcttcaatgatgattctaagacaggtatgagcctattgttcacaagctcaaaaattgacttaattgttaacttcctaaa |
13898070 |
T |
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| Q |
202 |
atttgtcgaatgaaactcgatactagctattttcctttgcttct |
245 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
13898071 |
atttgtcgaatgaaactcgatactcgctattttcctttgtttct |
13898114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 13887334 - 13887090
Alignment:
| Q |
1 |
tgcaaagggaatttcaggcaaatgaggttgtaaacaaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagcctcagcaaaatatct |
100 |
Q |
| |
|
|||||| || |||||||| |||||| |||| |||||| |||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
13887334 |
tgcaaaaggtatttcaggtaaatgaagttgcaaacaagaaggatcaacatcaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatct |
13887235 |
T |
|
| Q |
101 |
tgaagatctatggcaacatttttcttcaatgataattctaagactggtatgagcctattgttcacaagctcaaaaattgactcaattgttaactttctaa |
200 |
Q |
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|||||||| |||| ||| ||||||||| ||| | |||||||| ||||||||||||||||||||||||||||| | ||| ||| ||||||| || |||| |
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| T |
13887234 |
tgaagatcgatggaaaccgatttcttcaacgatgaatctaagacaggtatgagcctattgttcacaagctcaaacaatgaatcagttgttaatttcctaa |
13887135 |
T |
|
| Q |
201 |
aatttgtcgaatgaaactcgatactagctattttcctttgcttct |
245 |
Q |
| |
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| ||||| ||||||||||||||||| ||| |||||||||| |||| |
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| T |
13887134 |
actttgttgaatgaaactcgatactcgctgttttcctttgtttct |
13887090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 7295875 - 7295946
Alignment:
| Q |
1 |
tgcaaagggaatttcaggcaaatgaggttgtaaacaaccaggatcaacaccaaaagctatcatacaaacatt |
72 |
Q |
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|||||| || |||||| |||||| |||||| |||||||||||||||||||||||| |||||| |||||||| |
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| T |
7295875 |
tgcaaatggtatttcaaacaaatgtggttgtgaacaaccaggatcaacaccaaaagatatcatgcaaacatt |
7295946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 28667238 - 28667315
Alignment:
| Q |
32 |
aaacaaccaggatcaacaccaaaagctatcatacaaacattatcaaaagttagcctcagcaaaatatcttgaagatct |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| || | | ||| |||||||||||| |
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| T |
28667238 |
aaacaaccaggatcaacaccaaaagctatcatacaaacattgtcaaaagttagtcttaaaagaatgtcttgaagatct |
28667315 |
T |
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