View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13013_low_13 (Length: 243)
Name: NF13013_low_13
Description: NF13013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13013_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 1034858 - 1034631
Alignment:
| Q |
1 |
tatgaggtttcttaacttaggtatggaaagaaagcttaagaaatccatacaaaaagttgatgaatttgctgagaatgttataagggcaagaaagaaagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1034858 |
tatgaggtttcttaacttaggtatggaaagaaagcttaagaaatccatacaaaaagttgatgaatttgctgagaatgttataagggcaagaaagaaagaa |
1034759 |
T |
|
| Q |
101 |
ctttctttgcaaaatgaagacgataaggaaaaatcggatttgttaactgtgtttatgaggcttaaggatgagaatggaaagtcttattcagataagtttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1034758 |
ctttctttgcaaaatgaagacgataaggaaaaatcggatttgttaactgtgtttatgaggcttaaggatgagaatggaaagtcttattcagataagtttt |
1034659 |
T |
|
| Q |
201 |
tgagggatatttgtgtaaattttatatt |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
1034658 |
tgagggatatttgtgtaaattttatatt |
1034631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 13897801 - 13897574
Alignment:
| Q |
1 |
tatgaggtttcttaacttaggtatggaaagaaagcttaagaaatccatacaaaaagttgatgaatttgctgagaatgttataagggcaagaaagaaagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13897801 |
tatgaggtttcttaacttaggtatggaaagaaagctcaagaaatcaatacaaaaagttgatgaatttgctgagaatgttataagggcaagaaagaaagaa |
13897702 |
T |
|
| Q |
101 |
ctttctttgcaaaatgaagacgataaggaaaaatcggatttgttaactgtgtttatgaggcttaaggatgagaatggaaagtcttattcagataagtttt |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13897701 |
ctttctttgcaaaatgaagacaataaggaaaaatcggatttgttaactgtgttcatgaggcttaaggatgagaatggaaagtcttattcagataagtttt |
13897602 |
T |
|
| Q |
201 |
tgagggatatttgtgtaaattttatatt |
228 |
Q |
| |
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|||||||||||||||||||||| ||||| |
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| T |
13897601 |
tgagggatatttgtgtaaatttcatatt |
13897574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 13887403 - 13887636
Alignment:
| Q |
1 |
tatgaggtttcttaacttaggtatggaaagaaagcttaagaaatccatacaaaaagttgatgaatttgctgagaatgttataagggcaagaaagaaagaa |
100 |
Q |
| |
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||||||||||||||||||||||||||| |||||| | ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13887403 |
tatgaggtttcttaacttaggtatggagagaaagttgaaggaatcaatacaaaaagttgatgaatttgctgagaatgttataagggcaagaaagaaagaa |
13887502 |
T |
|
| Q |
101 |
ctttctttgcaaaat------gaagacgataaggaaaaatcggatttgttaactgtgtttatgaggcttaaggatgagaatggaaagtcttattcagata |
194 |
Q |
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||||||||| || || ||||| |||||| |||||| |||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||| |
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| T |
13887503 |
ctttctttggaacatgatatggaagatgataagcgaaaatcagatttgttaactgtgtttatgaagcttaaagatgagaatggaaaggcttattcagata |
13887602 |
T |
|
| Q |
195 |
agtttttgagggatatttgtgtaaattttatatt |
228 |
Q |
| |
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|||| ||||||||||| ||||||| ||||||||| |
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| T |
13887603 |
agttcttgagggatatatgtgtaagttttatatt |
13887636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 8 - 197
Target Start/End: Complemental strand, 7295828 - 7295637
Alignment:
| Q |
8 |
tttcttaacttaggtatggaaagaaagctt--aagaaatccatacaaaaagttgatgaatttgctgagaatgttataagggcaagaaagaaagaactttc |
105 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||| | |||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
7295828 |
tttcttaacttaggtatgacaagaaagcttttaagaaaacaatacaaaaagctgatgaatttgctgagaatattataagggcaagaaagaaggaactttc |
7295729 |
T |
|
| Q |
106 |
tttgcaaaatgaagacgataaggaaaaatcggatttgttaactgtgtttatgaggcttaaggatgagaatggaaagtcttattcagataagt |
197 |
Q |
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|||||||||| |||| |||||||||||||| |||||||||||||||| |||||||||| |||||||||||||| || || |||||||||| |
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| T |
7295728 |
tttgcaaaattaagatgataaggaaaaatcaaatttgttaactgtgttaatgaggcttacggatgagaatggaatttcatactcagataagt |
7295637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 7291781 - 7291699
Alignment:
| Q |
114 |
atgaagacgataaggaaaaa--tcggatttgttaactgtgtttatgaggcttaaggatgagaatggaaagtcttattcagataa |
195 |
Q |
| |
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||||||| |||||||||||| || |||| || || ||||||||||||||||||||||||||||| ||| || ||||||||||| |
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| T |
7291781 |
atgaagatgataaggaaaaaaatcagattcgtaaa-tgtgtttatgaggcttaaggatgagaatgaaaattcatattcagataa |
7291699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 226
Target Start/End: Complemental strand, 28667137 - 28666913
Alignment:
| Q |
2 |
atgaggtttcttaacttaggtatggaaagaaagcttaagaaatccatacaaaaagttgatgaatttgctgagaatgttataagggcaagaaagaaagaac |
101 |
Q |
| |
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|||||| |||||||||||||| | |||||||| || |||||||| || || |||||||||||||| |||||| |||||| | ||||| || |||| |
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| T |
28667137 |
atgaggcttcttaacttaggtgtagaaagaaaactcaagaaatcaattaaaggggttgatgaatttgcaatgaatgtcataaggactagaaaaaaggaac |
28667038 |
T |
|
| Q |
102 |
tttctttgcaaaatgaagacgataaggaaaaatcggatttgttaactgtgtttatgaggcttaaggatgagaatggaaagtcttattcagataagttttt |
201 |
Q |
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| |||||| || ||| || | || ||| || |||||||||||||| ||||||| | | |||||||||||||||| ||||||||||||||||| | |
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| T |
28667037 |
tatctttggaagttgatgaaaagaaacaaaggtcagatttgttaactgtttttatgaagatgaaggatgagaatggaagtgcttattcagataagtttct |
28666938 |
T |
|
| Q |
202 |
gagggatatttgtgtaaattttata |
226 |
Q |
| |
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||||||||| ||||| ||||||||| |
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| T |
28666937 |
gagggatatatgtgtgaattttata |
28666913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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