View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13013_low_14 (Length: 231)
Name: NF13013_low_14
Description: NF13013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13013_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 39291663 - 39291877
Alignment:
| Q |
18 |
ggttccttaacattcaaaattcaaagtaca-------aacttgcagaagagactccaaaggaagttcgaatacattgacacccgtgcattgtatgagtta |
110 |
Q |
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| T |
39291663 |
ggttccttaacattcaaaattcaaagtacacgaagaaaacttgcagaagagactccaaaggaagttagaatacattgacacccgtgcattgtatgagtta |
39291762 |
T |
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| Q |
111 |
gtagtttcttagtcttttctataaatagtagagtcaaactccatacaaagaagttc-----atttatgttccaaaaacttgc---ctaaataacatatcc |
202 |
Q |
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| T |
39291763 |
gtagtttcttagttttttctataaatagtagagtcaaactccatacaaaaaagttcatttaatttatgttccaaaaacttgcctactaaataacatatct |
39291862 |
T |
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| Q |
203 |
gcctcacagaataat |
217 |
Q |
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| T |
39291863 |
gcctcacagaataat |
39291877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 29456757 - 29456818
Alignment:
| Q |
125 |
ttttctataaatagtagagtcaaactccatacaaagaagttcatttatgttccaaaaacttg |
186 |
Q |
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| T |
29456757 |
ttttctataaatagtagaatcaaacttcatgcaaaggagtttattttcgttccaaaaacttg |
29456818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 40945507 - 40945572
Alignment:
| Q |
124 |
cttttctataaatagtagagtcaaactccatacaaagaagttcatttatgttcca-aaaacttgcc |
188 |
Q |
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| T |
40945507 |
cttttttatgaatagtagaatcaaacttcatgcaaaggagttcatttatgttccacaaaacttgcc |
40945572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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