View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13013_low_2 (Length: 533)

Name: NF13013_low_2
Description: NF13013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13013_low_2
NF13013_low_2
[»] chr3 (4 HSPs)
chr3 (133-515)||(11438686-11439068)
chr3 (185-495)||(15461216-15461526)
chr3 (158-495)||(11317130-11317467)
chr3 (28-72)||(11438572-11438616)
[»] scaffold0071 (1 HSPs)
scaffold0071 (185-495)||(666-976)
[»] chr8 (4 HSPs)
chr8 (158-495)||(27504899-27505236)
chr8 (167-478)||(27498688-27498999)
chr8 (169-495)||(27544352-27544678)
chr8 (214-495)||(27496478-27496759)


Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 133 - 515
Target Start/End: Original strand, 11438686 - 11439068
Alignment:
Q  133 tatgtaagaagatgatatttgaattgaatttctcaaaatctaaaaattaaacccatgtttaaccaatttctcttcaattacagtgtttaactgctcaatc 232  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  11438686 tatgtaacaagatgatatttgaattgaatttctccaaatctaaaaattaaatccatgtttaaccaatttctcttcaattacagtgtttaattgctcaatc 11438785  T
Q  233 atttcagttgttagaagcttttctccatctccaacttggccacgacgaaaataagctttattttcaacaccaaatgacactttcccagtcttattaacct 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11438786 atttcagttgttagaagcttttctccatctccaacttggccacgacgaaaaaaagctttattttcaacaccaaatgacactttcccagtcttattaacct 11438885  T
Q  333 ccaagttgctaagcttctcaaaactacacaaatttaatataacatcaaccacccctttagattcttcatctttagtgaaaggacactccaaaaattcagc 432  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11438886 ccaagttgctaagcttctcaaaactacacaaatttaatatatcatcaaccacccctttagattcttcatctttagtgaaaggacactccaaaaattcagc 11438985  T
Q  433 aagctttttcaaatgaaaatcaggcttcattttcatttcttcaaatctcaaaatcataaccttgtttgatctttccaaacttt 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11438986 aagctttttcaaatgaaaatcaggcttcattttcatttcttcaaatctcaaaaacataaccttgtttgatctttccaaacttt 11439068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 185 - 495
Target Start/End: Complemental strand, 15461526 - 15461216
Alignment:
Q  185 ccatgtttaaccaatttctcttcaattacagtgtttaactgctcaatcatttcagttgttagaagcttttctccatctccaacttggccacgacgaaaat 284  Q
    ||||||||| |||| || | ||| ||||| || |||||| | |||||||||||| |||  |||||  |||  | ||||||||||| ||||| ||| ||      
T  15461526 ccatgtttacccaaattttgttctattactgtatttaaccgttcaatcatttcaattgagagaagagttttccaatctccaactttgccactacggaaga 15461427  T
Q  285 aagctttattttcaacaccaaatgacactttcccagtcttattaacctccaagttgctaagcttctcaaaactacacaaatttaatataacatcaaccac 384  Q
    |||||||||||||  | ||| | |  | ||| |||  |||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  15461426 aagctttattttcttccccagacggtaattttccaaacttatttacctccaagttgctcagcttctcaaaactacacaaatttaatatatcatcaaccac 15461327  T
Q  385 ccctttagattcttcatctttagtgaaaggacactccaaaaattcagcaagctttttcaaatgaaaatcaggcttcattttcatttcttcaaatctcaaa 484  Q
     |||||||||||||| ||||| | ||| |||||| ||||||| ||||||| || |||||||| ||||  |||||||||||||||||||||| ||||||||    
T  15461326 tcctttagattcttcttctttggagaatggacaccccaaaaactcagcaacctctttcaaataaaaacaaggcttcattttcatttcttcatatctcaaa 15461227  T
Q  485 atcataacctt 495  Q
    | ||| |||||    
T  15461226 aacatcacctt 15461216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 158 - 495
Target Start/End: Original strand, 11317130 - 11317467
Alignment:
Q  158 gaatttctcaaaatctaaaaattaaacccatgtttaaccaatttctcttcaattacagtgtttaactgctcaatcatttcagttgttagaagcttttctc 257  Q
    |||||||| ||||||||||||   ||||||||||| || ||||||||||||   |  ||||||| |||||||| |||||||||||| ||| | ||||  |    
T  11317130 gaatttcttaaaatctaaaaacacaacccatgttttacaaatttctcttcagcgatggtgtttatctgctcaaccatttcagttgtgagatgatttttcc 11317229  T
Q  258 catctccaacttggccacgacgaaaataagctttattttcaacaccaaatgacactttcccagtcttattaacctccaagttgctaagcttctcaaaact 357  Q
     ||||||||  |  ||| |||| ||| ||||||||||||| | |  ||   |  |||||||  ||||||| |||||||| ||||| | ||||||||||||    
T  11317230 aatctccaatattaccaagacggaaaaaagctttattttccatattaagaaaacctttcccgatcttattgacctccaaattgctcaacttctcaaaact 11317329  T
Q  358 acacaaatttaatataacatcaaccacccctttagattcttcatctttagtgaaaggacactccaaaaattcagcaagctttttcaaatgaaaatcaggc 457  Q
    |||||||||||||||| |||||||||| |||||  ||||||| ||||| | ||| |||||||||||||| |||||||||| |||||||| ||||| |||     
T  11317330 acacaaatttaatatatcatcaaccacacctttgaattcttcttctttggagaatggacactccaaaaactcagcaagctctttcaaataaaaattaggt 11317429  T
Q  458 ttcattttcatttcttcaaatctcaaaatcataacctt 495  Q
    |||||||||||||||||| || |||||| ||| |||||    
T  11317430 ttcattttcatttcttcatatttcaaaaacatcacctt 11317467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 11438572 - 11438616
Alignment:
Q  28 gagagaaagtgcatgagataattcagatccctatattagatctac 72  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  11438572 gagagaaagtgcatgagataattcagatccccatattagatctac 11438616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 185 - 495
Target Start/End: Original strand, 666 - 976
Alignment:
Q  185 ccatgtttaaccaatttctcttcaattacagtgtttaactgctcaatcatttcagttgttagaagcttttctccatctccaacttggccacgacgaaaat 284  Q
    ||||||||| |||| || | ||| ||||| || |||||| | |||||||||||| |||  |||||  |||  | ||||||||||| ||||| ||| ||      
T  666 ccatgtttacccaaattttgttctattactgtatttaaccgttcaatcatttcaattgagagaagagttttccaatctccaactttgccactacggaaga 765  T
Q  285 aagctttattttcaacaccaaatgacactttcccagtcttattaacctccaagttgctaagcttctcaaaactacacaaatttaatataacatcaaccac 384  Q
    |||||||||||||  | ||| | |  | ||| |||  |||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  766 aagctttattttcttccccagacggtaattttccaaacttatttacctccaagttgctcagcttctcaaaactacacaaatttaatatatcatcaaccac 865  T
Q  385 ccctttagattcttcatctttagtgaaaggacactccaaaaattcagcaagctttttcaaatgaaaatcaggcttcattttcatttcttcaaatctcaaa 484  Q
     |||||||||||||| ||||| | ||| |||||| ||||||| ||||||| || |||||||| ||||  |||||||||||||||||||||| ||||||||    
T  866 tcctttagattcttcttctttggagaatggacaccccaaaaactcagcaacctctttcaaataaaaacaaggcttcattttcatttcttcatatctcaaa 965  T
Q  485 atcataacctt 495  Q
    | ||| |||||    
T  966 aacatcacctt 976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 5e-51; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 158 - 495
Target Start/End: Complemental strand, 27505236 - 27504899
Alignment:
Q  158 gaatttctcaaaatctaaaaattaaacccatgtttaaccaatttctcttcaattacagtgtttaactgctcaatcatttcagttgttagaagcttttctc 257  Q
    ||||||||||||||||||||| | |||||||||||| | ||||||||||| |  ||  ||||||||||||||| ||||| |||||| ||||| ||||  |    
T  27505236 gaatttctcaaaatctaaaaactcaacccatgtttaccaaatttctcttcgacaactatgtttaactgctcaaccattttagttgtgagaagatttttcc 27505137  T
Q  258 catctccaacttggccacgacgaaaataagct-ttattttcaacaccaaatgacactttcccagtcttattaacctccaagttgctaagcttctcaaaac 356  Q
     ||||||||||| |||| |||| ||| ||| | || |||||||   |  | || | ||||||  ||||||| | ||||||||||||||||||||||||||    
T  27505136 aatctccaactttgccaagacggaaa-aagttcttgttttcaatttccgacgaaattttcccgttcttattgatctccaagttgctaagcttctcaaaac 27505038  T
Q  357 tacacaaatttaatataacatcaaccacccctttagattcttcatctttagtgaaaggacactccaaaaattcagcaagctttttcaaatgaaaatcagg 456  Q
    ||||||||| ||||||| |||||||||| || || |||||||| ||||  | ||| |||||| ||||||| | ||||| || |||||||  ||||| |||    
T  27505037 tacacaaatgtaatatatcatcaaccacaccattggattcttcttcttcggagaatggacaccccaaaaacttagcaatctctttcaaaacaaaattagg 27504938  T
Q  457 cttcattttcatttcttcaaatctcaaaatcataacctt 495  Q
     |||||||||||||||||| || |||||| |||||||||    
T  27504937 tttcattttcatttcttcatatttcaaaaacataacctt 27504899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 167 - 478
Target Start/End: Original strand, 27498688 - 27498999
Alignment:
Q  167 aaaatctaaaaattaaacccatgtttaaccaatttctcttcaattacagtgtttaactgctcaatcatttcagttgttagaagcttttctccatctccaa 266  Q
    |||||||||||| | |||||||||||| ||||||| | |||  | | ||||||||| |||| ||||||||||| ||| ||||| ||||  | ||||||||    
T  27498688 aaaatctaaaaactcaacccatgtttacccaatttattttcggtgatagtgtttaattgcttaatcatttcagctgtgagaaggtttttccaatctccaa 27498787  T
Q  267 cttggccacgacgaaaataagctttattttcaacaccaaatgacactttcccagtcttattaacctccaagttgctaagcttctcaaaactacacaaatt 366  Q
    ||||||||||||||||| |||||||||||||||||||   ||  ||| |  | ||||| || |||||||||||||| |  ||||||||||||||||||||    
T  27498788 cttggccacgacgaaaaaaagctttattttcaacacctgttgctactcttacggtcttgttgacctccaagttgcttaagttctcaaaactacacaaatt 27498887  T
Q  367 taatataacatcaaccacccctttagattcttcatctttagtgaaaggacactccaaaaattcagcaagctttttcaaatgaaaatcaggcttcattttc 466  Q
    ||||||| |||| | ||  || || |||||||| || |||  ||| |||||  ||| ||| ||||||| ||||||||||| ||||  ||| |||||||||    
T  27498888 taatatatcatcgatcatgcccttggattcttcttcattaaagaatggacaacccagaaactcagcaatctttttcaaataaaaactaggtttcattttc 27498987  T
Q  467 atttcttcaaat 478  Q
    ||||||||||||    
T  27498988 atttcttcaaat 27498999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 169 - 495
Target Start/End: Complemental strand, 27544678 - 27544352
Alignment:
Q  169 aatctaaaaattaaacccatgtttaaccaatttctcttcaattacagtgtttaactgctcaatcatttcagttgttagaagcttttctccatctccaact 268  Q
    |||||||||  | ||||||||| || |||||||   |||| | | |||||| ||||||||||||||||||||||| ||||  ||||  | ||||||||||    
T  27544678 aatctaaaatctcaacccatgtgtagccaatttactttcagtgatagtgttcaactgctcaatcatttcagttgtgagaacatttttgcaatctccaact 27544579  T
Q  269 tggccacgacgaaaataagctttattttcaacaccaaatgacactttcccagtcttattaacctccaagttgctaagcttctcaaaactacacaaattta 368  Q
     ||||  | || ||| |   ||| ||||| | | |||| || | ||| || |||||||| |||||||||||||| || |||||||||||||| | |||||    
T  27544578 cggcctagccggaaaaagtatttgttttccatatcaaaagaaagttttcctgtcttattgacctccaagttgctcagtttctcaaaactacatagattta 27544479  T
Q  369 atataacatcaaccacccctttagattcttcatctttagtgaaaggacactccaaaaattcagcaagctttttcaaatgaaaatcaggcttcattttcat 468  Q
    ||||| |||||||||  ||||| |||||||| ||||| | ||| |||||  ||||||| | ||||| || |||||||| ||||  ||| |||||||||||    
T  27544478 atatatcatcaaccatacctttggattcttcttctttggagaatggacaacccaaaaaattagcaatctctttcaaataaaaactaggattcattttcat 27544379  T
Q  469 ttcttcaaatctcaaaatcataacctt 495  Q
    ||||||| || |||||| ||| |||||    
T  27544378 ttcttcatatttcaaaaacatcacctt 27544352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 214 - 495
Target Start/End: Original strand, 27496478 - 27496759
Alignment:
Q  214 agtgtttaactgctcaatcatttcagttgttagaagcttttctccatctccaacttggccacgacgaaaataagctttattttcaacaccaaatgacact 313  Q
    |||||||||| ||||||||||||| ||||| ||||| ||||  | |||||||||||| |||||| | ||| |||||||||||||| ||||| |||| | |    
T  27496478 agtgtttaacagctcaatcatttctgttgtgagaagatttttccaatctccaacttgtccacgatggaaaaaagctttattttcatcaccagatgatatt 27496577  T
Q  314 ttcccagtcttattaacctccaagttgctaagcttctcaaaactacacaaatttaatataacatcaaccacccctttagattcttcatctttagtgaaag 413  Q
     | |  |||||||  || ||||||||||  || ||||||||||||||||||||||||| | |||||||||  || || |||||||| ||  |||  ||      
T  27496578 cttcatgtcttatcgacttccaagttgcccagattctcaaaactacacaaatttaataaatcatcaaccatgccgttggattcttcttcaatagaaaatc 27496677  T
Q  414 gacactccaaaaattcagcaagctttttcaaatgaaaatcaggcttcattttcatttcttcaaatctcaaaatcataacctt 495  Q
     |||  ||||||| ||||||| ||||||||||| ||||  |||||||||||||  ||||||| || |||||| ||| |||||    
T  27496678 cacaacccaaaaactcagcaatctttttcaaataaaaactaggcttcattttcgcttcttcatatttcaaaaacatcacctt 27496759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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