View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13013_low_5 (Length: 385)
Name: NF13013_low_5
Description: NF13013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13013_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 45 - 368
Target Start/End: Complemental strand, 39486451 - 39486128
Alignment:
| Q |
45 |
ggaaacatttcgacttccctgatatcnnnnnnnctgatccatgtggaggtagatacatctacgtccacaatcttccatcaaggttcaaccaagacatgtt |
144 |
Q |
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| T |
39486451 |
ggaagcatttcggcttccctgatatcaaaaaaactgatccatgtggaggtagatacatctacgtccacaatcttccatcaaggttcaaccaagacatgtt |
39486352 |
T |
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| Q |
145 |
aagagaatgcaaaaccctaagtctttggacgaacatgtgtaagtttactaccaatgcaggtcttggtccgccactcgaaaacatcgacggagttttctct |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39486351 |
aagagaatgcaaaaccctaagtctttggacgaacatgtgtaagtttactaccaatgcaggtcttggtccgccactcgaaaacatcgacggagttttctct |
39486252 |
T |
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| Q |
245 |
gatactggttggtatgctactaatcaatttgctgttgatgttattttcgcgaaccggatgaaacaatatgaatgtttgacaaatgattcttcaattgctg |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39486251 |
gatactggttggtatgctactaatcaatttgctgttgatgttattttcgcgaaccggatgaaacaatatgaatgtttgacaaatgattcttcaattgctg |
39486152 |
T |
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| Q |
345 |
ctgctgtttttgtaccgttttatg |
368 |
Q |
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|||||||||||||||||||||||| |
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| T |
39486151 |
ctgctgtttttgtaccgttttatg |
39486128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 164 - 368
Target Start/End: Original strand, 30078815 - 30079019
Alignment:
| Q |
164 |
agtctttggacgaacatgtgtaagtttactaccaatgcaggtcttggtccgccactcgaaaacatcgacggagttttctctgatactggttggtatgcta |
263 |
Q |
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| T |
30078815 |
agtctttggactaatatgtgtaagtttactaccaatgctggtcttgggccgccacttgagaatgttgaaggggttttctccgatacgggttggtatgcga |
30078914 |
T |
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| Q |
264 |
ctaatcaatttgctgttgatgttattttcgcgaaccggatgaaacaatatgaatgtttgacaaatgattcttcaattgctgctgctgtttttgtaccgtt |
363 |
Q |
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| T |
30078915 |
caaatcagtttgctgttgatgttatatttagtaataggatgaagcagtatgagtgtttgactgaggattcttcaattgctgctgcgatttttgttccgtt |
30079014 |
T |
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| Q |
364 |
ttatg |
368 |
Q |
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||||| |
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| T |
30079015 |
ttatg |
30079019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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