View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13013_low_7 (Length: 367)
Name: NF13013_low_7
Description: NF13013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13013_low_7 |
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| [»] chr3 (3 HSPs) |
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| [»] chr2 (3 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 14 - 367
Target Start/End: Complemental strand, 43733419 - 43733067
Alignment:
| Q |
14 |
atgaagaagattgatgatggactgaagatatagatcgaagaagaggaagaaagggataataactgttctacctttgtgttgcaataacagaatgttggtt |
113 |
Q |
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| T |
43733419 |
atgaagaagattgatgatggactgaagatgtagatcgaagaagaggaagaaagggataataactgttctacctttgtgttacaataacagaatgttggtt |
43733320 |
T |
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| Q |
114 |
tgggatagtagctttgcttttgttgtgctagttagccttgctgtgtagatttgagattagcttgaagaagaaaggctgaagatcaattgaaggaagaaaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43733319 |
tgggatagtagctttgcttttgttgtgctagttagccttgctgtgtagatttcagattagcttgaagaagaaaggctgaagatcaattgaaggaagaaaa |
43733220 |
T |
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| Q |
214 |
gcaagcaatcgattgaaggaaaaggatgaaggtggttcaatttatcatacttattataaaagccaattaggtcaagcaaatgcttaaccctacttgcttt |
313 |
Q |
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| T |
43733219 |
gtaagcaatcgattaaaggaaaaggatgaaggcggttcaatttatcatacttattataaaagtcaatta-gtcaagcaaatgcttaaccctacttgcttt |
43733121 |
T |
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| Q |
314 |
tgtgttttccctcccaaacacatctcctatgtgtgttatgcaagctttggtacc |
367 |
Q |
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| T |
43733120 |
tgtgttttccctcccaaacacatctcctaggtgtgttatgcaagctttggtacc |
43733067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 330
Target Start/End: Complemental strand, 22310168 - 22310096
Alignment:
| Q |
257 |
atcatacttattataaaagccaattaggtcaagcaaatgcttaaccctacttgcttttgtgttttccctcccaa |
330 |
Q |
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| T |
22310168 |
atcatacttattctaaaagcttattaggtcaagtaaatgcttaaccctaatagctttggt-atttccctcccaa |
22310096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 11483944 - 11483888
Alignment:
| Q |
255 |
ttatcatacttattataaaagccaattaggtcaagcaaatgcttaaccctacttgct |
311 |
Q |
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|||||||||||| | ||||||| ||||||||||||||| |||||| ||||| ||||| |
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| T |
11483944 |
ttatcatacttactctaaaagctaattaggtcaagcaattgcttagccctaattgct |
11483888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 5e-47; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 256 - 367
Target Start/End: Original strand, 9070896 - 9071007
Alignment:
| Q |
256 |
tatcatacttattataaaagccaattaggtcaagcaaatgcttaaccctacttgcttttgtgttttccctcccaaacacatctcctatgtgtgttatgca |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||| ||||||| |
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| T |
9070896 |
tatcatacttattataaaagccaattaggtcaagcaaatgcttaaccctaattgcttttgtgttttccctcccaaacatatctcctaggtgtcttatgca |
9070995 |
T |
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| Q |
356 |
agctttggtacc |
367 |
Q |
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|||||||||||| |
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| T |
9070996 |
agctttggtacc |
9071007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 260 - 367
Target Start/End: Complemental strand, 18141050 - 18140943
Alignment:
| Q |
260 |
atacttattataaaagccaattaggtcaagcaaatgcttaaccctacttgcttttgtgttttccctcccaaacacatctcctatgtgtgttatgcaagct |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
18141050 |
atacttattataaaagccaattaggtcaagcaaatgcttaaccctaattgcttttgtgctttccctcccaaacacatctcctaggtgtgttatgcaagct |
18140951 |
T |
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| Q |
360 |
ttggtacc |
367 |
Q |
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|||||||| |
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| T |
18140950 |
ttggtacc |
18140943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 30844022 - 30843968
Alignment:
| Q |
14 |
atgaagaagattgatgatggactgaagatatagatcgaagaagaggaagaaaggg |
68 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
30844022 |
atgaagaagattgaggatggactgaagatgtagatcgaagaagaggaagaaaggg |
30843968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 261 - 367
Target Start/End: Original strand, 5336241 - 5336347
Alignment:
| Q |
261 |
tacttattataaaagccaattaggtcaagcaaatgcttaaccctacttgcttttgtgttttccctcccaaacacatctcctatgtgtgttatgcaagctt |
360 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| || ||||||||||||||||| |
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| T |
5336241 |
tacttattataaaagtcaattaggtcaagcaaatgcttaaccctaattgcttttgtattttccctcccaaacacatctcataggtgtgttatgcaagctt |
5336340 |
T |
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| Q |
361 |
tggtacc |
367 |
Q |
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|| |||| |
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| T |
5336341 |
tgatacc |
5336347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 85 - 190
Target Start/End: Original strand, 36588813 - 36588916
Alignment:
| Q |
85 |
ctttgtgttgcaataacagaatgttggtttgggatagtagctttgcttttgttgtgctagttagccttgctgtgtagatttgagattagcttgaagaaga |
184 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||| ||| |||||| |||| | ||||| ||| |||||||| ||||| ||||||||| |
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| T |
36588813 |
ctttgtgttgcaataacagaatgttggtttgggattttaactttgc-tttcatgtgcttgttaactttgct-tgtggatttgagtttagcatgaagaaga |
36588910 |
T |
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| Q |
185 |
aaggct |
190 |
Q |
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|||||| |
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| T |
36588911 |
aaggct |
36588916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 256 - 327
Target Start/End: Complemental strand, 28336619 - 28336548
Alignment:
| Q |
256 |
tatcatacttattataaaagccaattaggtcaagcaaatgcttaaccctacttgcttttgtgttttccctcc |
327 |
Q |
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||||||||||| | ||||||| ||||||||||||||| |||||||||||| ||||||||||| ||||||||| |
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| T |
28336619 |
tatcatacttactctaaaagctaattaggtcaagcaattgcttaaccctaattgcttttgtgatttccctcc |
28336548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 85 - 190
Target Start/End: Original strand, 45619170 - 45619273
Alignment:
| Q |
85 |
ctttgtgttgcaataacagaatgttggtttgggatagtagctttgcttttgttgtgctagttagccttgctgtgtagatttgagattagcttgaagaaga |
184 |
Q |
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|||||||||||||||||| |||||||||||||||| || |||||| ||| |||||| |||| | ||||| ||| |||||||| ||||| ||||||||| |
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| T |
45619170 |
ctttgtgttgcaataacaaaatgttggtttgggattttaactttgc-tttcatgtgcttgttaactttgct-tgtggatttgagtttagcatgaagaaga |
45619267 |
T |
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| Q |
185 |
aaggct |
190 |
Q |
| |
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|||||| |
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| T |
45619268 |
aaggct |
45619273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 45619029 - 45619080
Alignment:
| Q |
14 |
atgaagaagattgatgatggactgaagatatagatcgaagaagaggaagaaa |
65 |
Q |
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|||||||||||||| |||||| ||||||| | |||||||||||||||||||| |
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| T |
45619029 |
atgaagaagattgaggatggattgaagatgtggatcgaagaagaggaagaaa |
45619080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 311
Target Start/End: Original strand, 47503634 - 47503689
Alignment:
| Q |
256 |
tatcatacttattataaaagccaattaggtcaagcaaatgcttaaccctacttgct |
311 |
Q |
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||||||||||| | ||||||| ||||| ||||||||| |||||||||||| ||||| |
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| T |
47503634 |
tatcatacttactctaaaagctaattaagtcaagcaattgcttaaccctaattgct |
47503689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 133
Target Start/End: Original strand, 3937481 - 3937529
Alignment:
| Q |
85 |
ctttgtgttgcaataacagaatgttggtttgggatagtagctttgcttt |
133 |
Q |
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|||||||||||||||||||||||||||||||| || || ||||||||| |
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| T |
3937481 |
ctttgtgttgcaataacagaatgttggtttggaattttaactttgcttt |
3937529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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