View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13013_low_8 (Length: 358)
Name: NF13013_low_8
Description: NF13013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13013_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 30898337 - 30898681
Alignment:
| Q |
1 |
caaacctcgtcatctggtgatgatattctaacagcaatgccatgtcttgtcacactgaatccaggggtaaagataacaagtgttgctgccggtgggcgtc |
100 |
Q |
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| T |
30898337 |
caaacctcgtcatctggtgatgatattctaacagcaatgccatgtcttgtcacactgaatccaggggtaaagataacaagtgttgctgctggtgggcgtc |
30898436 |
T |
|
| Q |
101 |
ataccctagtattgtcaggtattgactttatatggactatttattctcccgagcttaaaatttcatgtaatgtgaccatcttttgattgaagcatcactt |
200 |
Q |
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| T |
30898437 |
ataccctagtattgtcaggtattgaatttatatggactatttattctcccgagcttaaaatttcatgtaatgtgaccatcttttgattgaagcatcactt |
30898536 |
T |
|
| Q |
201 |
ttgtgctatggaagatcagacatgcagtcttagacatgtcattaattgtagctttctgaatttttcagatataggacaggtgtggggttggggctatgga |
300 |
Q |
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| T |
30898537 |
ttgtgctatggaagatcagacatgcagtcttagacatgtcattaattgtagctttctgaatttttcagatataggacaggtgtggggttggggctatgga |
30898636 |
T |
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| Q |
301 |
ggtgaagggcagcttggtttgggctccagagtacggatgatgtcc |
345 |
Q |
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| T |
30898637 |
ggtgaagggcagcttggtttgggctccagagtacgtatggtgtcc |
30898681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 323
Target Start/End: Original strand, 23117638 - 23117699
Alignment:
| Q |
262 |
ttttcagatataggacaggtgtggggttggggctatggaggtgaagggcagcttggtttggg |
323 |
Q |
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||||||||| | |||||||| |||||||||||||||||||| ||||| ||||| |||||||| |
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| T |
23117638 |
ttttcagatgtgggacaggtctggggttggggctatggaggcgaaggacagctaggtttggg |
23117699 |
T |
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