View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13014_high_3 (Length: 309)
Name: NF13014_high_3
Description: NF13014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13014_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 26 - 290
Target Start/End: Original strand, 44575294 - 44575558
Alignment:
| Q |
26 |
ccccaaacctcaccctcatgagctatcattgcttcttgcaattaacacaaaccaataataattctatttctttgatgggttttgttgtatgtcctaactt |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44575294 |
ccccaaacctcaccctcatgagctatcattgcttcttgcaattaacacaaaccaataataattctatttctttgatggattttgttgtatgtcctaactt |
44575393 |
T |
|
| Q |
126 |
aaaaataaagtatctccatttctctggcaattattggttaagaactcaacacttcaaaatgttctcttccatttttcccaatttgcaattacttgatttg |
225 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44575394 |
aaaaataaagtatctccatttgtctggcaattattggttaagaactcaacacttcaaaatgttctcttccatttttcccaatttgcaattacttgatttg |
44575493 |
T |
|
| Q |
226 |
agcttttgctattacatatccatagaagatatttgtgaatttgtcaaaaacaagagttgatgatg |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44575494 |
agcttttgctattacatatccatagaagatatttgtgaatttgtcaaaaacaagagttgatgatg |
44575558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 267
Target Start/End: Original strand, 32785575 - 32785711
Alignment:
| Q |
131 |
taaagtatctccatttctctggcaattattggttaagaactcaacacttcaaaatgttctcttccatttttcccaatttgcaattacttgatttgagctt |
230 |
Q |
| |
|
|||||| ||||||||| || ||||||||||||||||| | || | ||| ||||| ||||| |||||| ||||||||||| ||||||||||||||| |
|
|
| T |
32785575 |
taaagtttctccatttggctcgcaattattggttaagagatgaaagcatcaggatgttttcttctattttttccaatttgcaactacttgatttgagcta |
32785674 |
T |
|
| Q |
231 |
ttgctattacatatccatagaagatatttgtgaattt |
267 |
Q |
| |
|
||||||| ||||||| ||||| ||||||| ||||| |
|
|
| T |
32785675 |
ttgctataacatatctgaagaaggtatttgtcaattt |
32785711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 264
Target Start/End: Original strand, 1037524 - 1037597
Alignment:
| Q |
191 |
cttccatttttcccaatttgcaattacttgatttgagcttttgctattacatatccatagaagatatttgtgaa |
264 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||| ||| || ||||||| ||||| |||||||||| |
|
|
| T |
1037524 |
cttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaa |
1037597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 245
Target Start/End: Original strand, 12121317 - 12121371
Alignment:
| Q |
191 |
cttccatttttcccaatttgcaattacttgatttgagcttttgctattacatatc |
245 |
Q |
| |
|
||||| |||| |||||||||||||| ||||||||||| ||||||||| ||||||| |
|
|
| T |
12121317 |
cttccgttttccccaatttgcaattgcttgatttgagtttttgctataacatatc |
12121371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 264
Target Start/End: Original strand, 55908588 - 55908661
Alignment:
| Q |
191 |
cttccatttttcccaatttgcaattacttgatttgagcttttgctattacatatccatagaagatatttgtgaa |
264 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||| ||| || ||||||| ||||| |||||||||| |
|
|
| T |
55908588 |
cttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaa |
55908661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 18315121 - 18315171
Alignment:
| Q |
179 |
tcaaaatgttctcttccatttttcccaatttgcaattacttgatttgagct |
229 |
Q |
| |
|
||||||| || ||||||||||| ||||||||||| || ||||||||||||| |
|
|
| T |
18315121 |
tcaaaatattttcttccattttccccaatttgcagttgcttgatttgagct |
18315171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University