View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13014_low_1 (Length: 344)
Name: NF13014_low_1
Description: NF13014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13014_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 209 - 337
Target Start/End: Original strand, 4582887 - 4583015
Alignment:
| Q |
209 |
aaacaacgaacaacataccaaatcaatagagagagtgaactagctattcaattcaataacaatagtttttgtgtgttattttaaccaatcggattccata |
308 |
Q |
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| T |
4582887 |
aaacaacgaacaacataccaaatcaatagagagagtgaactagctattcaattcaataacaatagtttttgtgtgttattttaaccaatcggattccata |
4582986 |
T |
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| Q |
309 |
ttttaactaatgggattccatattttctt |
337 |
Q |
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| T |
4582987 |
ttttaactaatgggattccatattttctt |
4583015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 4582654 - 4582770
Alignment:
| Q |
1 |
gattctgagggaaacttttgtttggttagtgattgattcaagtatcattcttttctcttcgggctttgattcacagtgagccatggttcctttcttttga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4582654 |
gattctgagggaaacttttgtttggttagtgattgattcaagtatcattcttttctcttcgggctttgattcacagtgagccatgtttcctttcttttga |
4582753 |
T |
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| Q |
101 |
tttgacaatgcagaacg |
117 |
Q |
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| T |
4582754 |
tttgacaatgcagaacg |
4582770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 4582813 - 4582887
Alignment:
| Q |
160 |
caatgtaagatttctatttgtgaagtaacttaaacatgattaaactagcaaacaacgaacaacataccaaatcaa |
234 |
Q |
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| T |
4582813 |
caatgtaagatttctatttgtgaagtaacttaaacatgattaaactagcaaacaacgaacaacataccaaatcaa |
4582887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 4614318 - 4614428
Alignment:
| Q |
1 |
gattctgagggaaacttttgtttggttagtgattgattcaagtatcattcttttctcttcgggctttgattcacagtgagccatggttcctttcttttga |
100 |
Q |
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||||||||||||||||||||| |||||| |||||| |||||||||||||||||||| || || ||| ||||||| || |||||||||||||||| ||||| |
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| T |
4614318 |
gattctgagggaaacttttgtctggttactgattgtttcaagtatcattcttttctgtttggacttcgattcacggtcagccatggttcctttcgtttga |
4614417 |
T |
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| Q |
101 |
tttgacaatgc |
111 |
Q |
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||| ||||||| |
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| T |
4614418 |
ttttacaatgc |
4614428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 164 - 260
Target Start/End: Original strand, 4614472 - 4614568
Alignment:
| Q |
164 |
gtaagatttctatttgtgaagtaacttaaacatgattaaactagcaaacaacgaacaacataccaaatcaatagagagagtgaactagctattcaat |
260 |
Q |
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| T |
4614472 |
gtaagatttctatttgtcatgaaacttaaacatgattaaactagcaaacaaagagcaacataacaaatcaatagaaaaagaaaactagctattcaat |
4614568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 20143471 - 20143439
Alignment:
| Q |
7 |
gagggaaacttttgtttggttagtgattgattc |
39 |
Q |
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| T |
20143471 |
gagggaaacctttgtttggttagtgattgattc |
20143439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 20170039 - 20170071
Alignment:
| Q |
7 |
gagggaaacttttgtttggttagtgattgattc |
39 |
Q |
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| T |
20170039 |
gagggaaacctttgtttggttagtgattgattc |
20170071 |
T |
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