View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13015_high_1 (Length: 778)
Name: NF13015_high_1
Description: NF13015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13015_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 590; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 18 - 768
Target Start/End: Original strand, 15585347 - 15586103
Alignment:
| Q |
18 |
agtatgacatcttgtacacctcgctctcactgaatttatgttgaaagacatacagaatgttgctt------aatagcatatatagtgcagccctt-caaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||| |||||||||||||||||||| |||| |
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| T |
15585347 |
agtatgacatcttgtacacctcgctctcactgaatttatgatgtaagacatacagaatgttgcttcgtcacaatcgcatatatagtgcagccctttcaaa |
15585446 |
T |
|
| Q |
111 |
ttcaaatacaaagacaaaaattaaccatcatcaaacgcattagccattctccgaaaattgaacaggattgataataggattgggatgaaagagatgaaag |
210 |
Q |
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| T |
15585447 |
ttcaaatacaaacacaaaaattaaccattatcaaacgcattagccattctccaaaaattgaacaggattgataataggattgggatgaaagagatgaaag |
15585546 |
T |
|
| Q |
211 |
aataacaaaagctctgtagtggaagtgatgagcatgtggaacctcgaaaagtatttatagccaactgcaaaggtaaaagaagaagaaacagtaccaatca |
310 |
Q |
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| T |
15585547 |
aataacaaaagttctgcagtggaagtgatgagcatgtggaacctcaaaacgtatttatagccaactgcaaaggtaaaagcagaagaaacagtaccaatca |
15585646 |
T |
|
| Q |
311 |
gagcaatcacaaccgctcataaaaattaattcagattttacccaagtgacaaattagtgtcaacatttaccaattgataggatgcaagaggataagccaa |
410 |
Q |
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| T |
15585647 |
gatcaatcacaaccgctcataaaaaataattcaaattttacccaagtgacaaattagtgttaacatttaccaattgataggatgcaagaggataagccaa |
15585746 |
T |
|
| Q |
411 |
aaaccggtacaatgaatctcttaagtcaacatcaactatcagcatcaaatgtcagtcccctcgtgcattacaccgatttcgccacaaatgccaaataggt |
510 |
Q |
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| T |
15585747 |
aaaccggtacaatgaatctcttaagtcaacatcaactgtcagcatcaaacgttagtcccctcgtgaattacaccgatttcgccacaaatgccaaatagga |
15585846 |
T |
|
| Q |
511 |
gtggatagaacaacgtgcaccacttagagaaggaggttaaaccctaggtaaaaaaccacagaatttcactgcatggtgtaatggcacagatnnnnnnntc |
610 |
Q |
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| T |
15585847 |
gtggatagaacaacgcgcaccacttgaagaaggaggttaaaccctaggtaaaaaaccacagaatttcactgcatggtgtaatggcacagataaaaaaatc |
15585946 |
T |
|
| Q |
611 |
tctattcagtacaaactttcagtttcaacaggggaattccaacatacgctttggtaagattatagatttgatactaatgaaaatactgcaaaatctgacc |
710 |
Q |
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| T |
15585947 |
tctattcagtgcaaactttcagtttcaacaggggaattccaacatacgctttggtaagattatagatttgatactaatgaaaatactgc-aaatctgatc |
15586045 |
T |
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| Q |
711 |
tgagattaaatatacggcagccatgtccgattgttggaatgtacaggctctccctatg |
768 |
Q |
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| T |
15586046 |
tgagattaaatatacagcaaccatgtccgattgttggaatgtacaggctctccctatg |
15586103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 3e-44; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 204 - 483
Target Start/End: Complemental strand, 14068278 - 14067989
Alignment:
| Q |
204 |
atgaaagaataacaaaagctctgtagtggaagtgatgagcatgtggaacctcgaaaagtatttatagccaactgcaaaggtaaaagaagaagaaacagta |
303 |
Q |
| |
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|||||| || |||||||| | || ||||||||||||||| |||||||||||| ||| |||||||||| |||||| || ||||||||| ||||||| |||| |
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| T |
14068278 |
atgaaaaaacaacaaaagttatgcagtggaagtgatgagtatgtggaacctccaaacgtatttatagacaactgaaatggtaaaagaggaagaaatagta |
14068179 |
T |
|
| Q |
304 |
ccaatcagagcaatcacaaccgctcata-aaaattaattcagattttacccaagtgacaaattagtg----------tcaacatttaccaattgatagga |
392 |
Q |
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| T |
14068178 |
acaatcaaagtaaccacaaccgctcataaaaaaataattcaaattttacccaagtaacaaataagagggaaaataattgaacatttaccaattgatagga |
14068079 |
T |
|
| Q |
393 |
tgcaagaggataagccaaaaaccggtacaatgaatctcttaagtcaacatcaactatcagcatcaaatgtcagtcccctcgtgcattacac |
483 |
Q |
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| T |
14068078 |
tgtaacatgataagccagaaaccaatacaatgaatctcttagatcaacatcaattgtc-gcatcacatgtgcgtcccctcgtgcaatacac |
14067989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 136
Target Start/End: Complemental strand, 14068531 - 14068492
Alignment:
| Q |
97 |
tgcagcccttcaaattcaaatacaaagacaaaaattaacc |
136 |
Q |
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| T |
14068531 |
tgcagcccttcaaattcaaatccaaatacaaaaattaacc |
14068492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 678
Target Start/End: Complemental strand, 14067828 - 14067783
Alignment:
| Q |
633 |
tttcaacaggggaattccaacatacgctttggtaagattatagatt |
678 |
Q |
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| T |
14067828 |
tttcaataggggaatccaaacatacgcattggtaagattatagatt |
14067783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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