View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13015_high_3 (Length: 538)
Name: NF13015_high_3
Description: NF13015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13015_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-150; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 110 - 530
Target Start/End: Original strand, 2688854 - 2689274
Alignment:
| Q |
110 |
gaactggtgcttgttcctcatggaattatagagagtagggaaaacaggatgagcacaataacaaaaaagaataaaagctaacagcaatagggatcccatt |
209 |
Q |
| |
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||||| ||| ||||||||||||| ||| |||||||||||||| |||||||| |||||| ||||||||||||||||| ||||| || ||||||||||||| |
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| T |
2688854 |
gaactagtgtttgttcctcatgggattgtagagagtagggaagacaggatgtgcacaa--acaaaaaagaataaaagataacatcagtagggatcccatt |
2688951 |
T |
|
| Q |
210 |
ccagtttacattatcacccttttgcccttttg--------caactccatcaaatgctgcagtccatgatattgacaaacacaccacttgcagatacataa |
301 |
Q |
| |
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||| |||||| |||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2688952 |
ccaatttacaatatcactcttttgcccttttgatgaagaccaactccatcaaacgctgcagtccatgatattgacaaacacacca------gatacataa |
2689045 |
T |
|
| Q |
302 |
gaaagaagactcaaattatctaaccaaattgttggcaagataatcactgcaaccaatatcacaaagaatttctttgcactaattgataaaccaaatactt |
401 |
Q |
| |
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||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2689046 |
gaaagcagactcaaattatccaaccaaattgttggcaagataatcaatgcaaccaatatcacaaaggatttctttgcactaattgataaaccaaatactt |
2689145 |
T |
|
| Q |
402 |
gaaactcttcagtgcaagagatgttttttaaacaaacagtaaataatttaatttatagtcttagattttatatattaggtctaacttatctttgcaaaac |
501 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
2689146 |
gaaactcttcggtgcaagagatgttttttaaacaaacagtaaataatttaatttatagtcttagagtttatatattaggtctaacttatctttacaaaac |
2689245 |
T |
|
| Q |
502 |
cgatttgtaagacaagggctgcctatgct |
530 |
Q |
| |
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|||||| |||||| || ||||| |||||| |
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| T |
2689246 |
cgatttataagacgagagctgcttatgct |
2689274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 74 - 412
Target Start/End: Original strand, 2696606 - 2696963
Alignment:
| Q |
74 |
acacccaaaataaaaagcaaaggcacttgcattagagaactggtgcttgttcctcatggaattatagagagtagggaaaacaggatgagcacaataacaa |
173 |
Q |
| |
|
|||||||||| |||||| | | |||||| |||||||||| ||||| || |||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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|
| T |
2696606 |
acacccaaaaaaaaaagtagaagcacttacattagagaattggtgtttattcctcatggaattgtagagagtagggaaaacaggatgtgcacaataacaa |
2696705 |
T |
|
| Q |
174 |
aaaagaataaaagctaacagcaatagggatcccattccagtttacattatcacccttttgcccttttgcaactccatcaaatgctgcagtccatgatatt |
273 |
Q |
| |
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||| | ||| ||||||||||| | || || ||| ||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
2696706 |
aaa-gcatacaagctaacagctgttggaattccactccagtttacaatatcacccttttgatgaacaccaattccatcaaatgctgcagtccatgatatt |
2696804 |
T |
|
| Q |
274 |
gacaaa--------------------cacaccacttgcagatacataagaaagaagactcaaattatctaaccaaattgttggcaagataatcactgcaa |
353 |
Q |
| |
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|||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2696805 |
gacaaaataataacaccagaagcaaacacaccacttgcagatacataagaaagcagactcaaattatccaaccaaattgttggcaagataatcactgcaa |
2696904 |
T |
|
| Q |
354 |
ccaatatcacaaagaatttctttgcactaattgataaaccaaatacttgaaactcttca |
412 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2696905 |
ccaatatcacaaagaatttctttgcaccaattgataaaccaaatacttgaaactcttca |
2696963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 96 - 412
Target Start/End: Complemental strand, 2722030 - 2721695
Alignment:
| Q |
96 |
gcacttgcattagagaactggtgcttgttcctcatggaattatagagagtagggaaaacaggatgagcacaataacaaaaaagaataaaagctaacagca |
195 |
Q |
| |
|
|||||| |||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| | ||| ||||||||||| |
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|
| T |
2722030 |
gcacttacattagagaattggtgtttgttcctcatggaattgtagagagtagggaaaacaggatgtgcacaatagcaaaaa-gcatacaagctaacagct |
2721932 |
T |
|
| Q |
196 |
atagggatcccattccagtttacattatcacccttttgcccttttgcaactccatcaaatgctgcagtccatgatattgacaaa---------------- |
279 |
Q |
| |
|
| || || ||| ||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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|
| T |
2721931 |
gttggaattccactccagtttacaatatcacccttttgatgaacaccaattccatcaaatgctgcagtccatgatattgacaaaataataacaccagaag |
2721832 |
T |
|
| Q |
280 |
----cacaccacttgcagatacataagaaagaagactcaaattatctaaccaaattgttggcaagataatcactgcaaccaatatcacaaagaatttctt |
375 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2721831 |
caaacacaccacttgcagatacataagaaagcagactcaaattatccaaccaaattgttggcaagataatcactgcaaccaatatcacaaagaatttctt |
2721732 |
T |
|
| Q |
376 |
tgcactaattgataaaccaaatacttgaaactcttca |
412 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |
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|
| T |
2721731 |
tgcaccaattgataaaccaaatacttgaaactcttca |
2721695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 4e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 276 - 412
Target Start/End: Complemental strand, 55778853 - 55778717
Alignment:
| Q |
276 |
caaacacaccacttgcagatacataagaaagaagactcaaattatctaaccaaattgttggcaagataatcactgcaaccaatatcacaaagaatttctt |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55778853 |
caaacacaccacttgcagatacataagaaagaaaactcaaattatctaaccaaattgttggcaagataatcactgcaaccaatatcacaaagaatttctt |
55778754 |
T |
|
| Q |
376 |
tgcactaattgataaaccaaatacttgaaactcttca |
412 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||| |
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| T |
55778753 |
tgcaccaattgataatccaaatacttgaaactcttca |
55778717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 276 - 412
Target Start/End: Complemental strand, 55843033 - 55842897
Alignment:
| Q |
276 |
caaacacaccacttgcagatacataagaaagaagactcaaattatctaaccaaattgttggcaagataatcactgcaaccaatatcacaaagaatttctt |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55843033 |
caaacacaccacttgcagatacataagaaagaaaactcaaattatctaaccaaattgttggcaagataatcactgcaaccaatatcacaaagaatttctt |
55842934 |
T |
|
| Q |
376 |
tgcactaattgataaaccaaatacttgaaactcttca |
412 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
55842933 |
tgcaccaattgataatccaaatacttgaaactcttca |
55842897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 279 - 412
Target Start/End: Complemental strand, 28047291 - 28047158
Alignment:
| Q |
279 |
acacaccacttgcagatacataagaaagaagactcaaattatctaaccaaattgttggcaagataatcactgcaaccaatatcacaaagaatttctttgc |
378 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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|
| T |
28047291 |
acacaccacttgtagatacataagaaagaagactcaaattatctaaccaaattgttggcaagataatcactgcaaccaatatcataaagaatttctttac |
28047192 |
T |
|
| Q |
379 |
actaattgataaaccaaatacttgaaactcttca |
412 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||| |
|
|
| T |
28047191 |
accaattgataatccaaatacttgaaactcttca |
28047158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 97 - 412
Target Start/End: Original strand, 10838038 - 10838372
Alignment:
| Q |
97 |
cacttgcattagagaactggtgcttgttcctcatggaattatagagagtagggaaaacaggatgagcacaataacaaaaaagaataaaagctaacagcaa |
196 |
Q |
| |
|
||||| |||||||||| || || |||||| ||||||| | || |||||||||||||| ||||||||||||||||||||| | ||| |||||||||||| |
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|
| T |
10838038 |
cacttacattagagaattgatgtttgttcttcatggaggtgtaaagagtagggaaaactggatgagcacaataacaaaaa-gcatacaagctaacagcag |
10838136 |
T |
|
| Q |
197 |
tagggatcccattccagtttacattatcacccttttgcccttttgcaactccatcaaatgctgcagtccatgatattgacaaa----------------- |
279 |
Q |
| |
|
|||| ||||||||||| || ||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10838137 |
taggtatcccattccacttcacaatatcacccttttgatgaacaccaactccatcaaatgcagcagtccatgatattgacaaaataataatagcagaagc |
10838236 |
T |
|
| Q |
280 |
---cacaccacttgcagatacataagaaagaagactcaaattatctaaccaaattgttggcaagataatcactgcaaccaatatcacaaagaatttcttt |
376 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||| ||||||||||| ||||||||| ||| | | || |||||||||||||| |||| |||| |
|
|
| T |
10838237 |
aaacacaccacttgcagatacataagaaagcaaactcaaatcatctaaccaaactgttggcaaaatactaagagctaccaatatcacaaaaaattgcttt |
10838336 |
T |
|
| Q |
377 |
gcactaattgataaaccaaatacttgaaactcttca |
412 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
10838337 |
gccctaattgataaaccaaagacttgaaactcttca |
10838372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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