View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13015_high_5 (Length: 240)
Name: NF13015_high_5
Description: NF13015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13015_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 1239751 - 1239974
Alignment:
| Q |
1 |
catgcttcatagattgtgatcaacgtactcgaaaacagtcaataaatagatagacaagggtggcaaaaagagctcgacaagtcaaattaccttttatgac |
100 |
Q |
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| T |
1239751 |
catgcttcatagattgtgatcaacatactcgaaaacaatcaataagtagatagacaagggtggcaaaaagagctcgaccagtcaaattaccttttatgac |
1239850 |
T |
|
| Q |
101 |
ccgttatttttgacaggttatgctaaggttttgagttcatccctttagttggtatgtccagtttaacatgctgaaaaagcgaagtagggcaggctggttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
1239851 |
ccgttatttttgacaggttatgctaaggttttgagttcatccctttagttggtatgtccggtttaacatgctgaaaaagcgaagtagggcaggctggctt |
1239950 |
T |
|
| Q |
201 |
gcaaactcttcaagtatgggtagt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
1239951 |
gcaaactcttcaagtatgggtagt |
1239974 |
T |
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