View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13015_low_5 (Length: 456)

Name: NF13015_low_5
Description: NF13015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13015_low_5
NF13015_low_5
[»] chr4 (4 HSPs)
chr4 (20-287)||(39825790-39826057)
chr4 (345-446)||(52055149-52055250)
chr4 (309-347)||(39826057-39826095)
chr4 (370-412)||(49866672-49866714)
[»] chr1 (5 HSPs)
chr1 (345-446)||(51787269-51787370)
chr1 (346-446)||(20186842-20186942)
chr1 (348-446)||(30339636-30339734)
chr1 (354-417)||(9672999-9673062)
chr1 (382-446)||(43740408-43740472)
[»] chr5 (4 HSPs)
chr5 (349-446)||(38280274-38280371)
chr5 (346-446)||(25955961-25956061)
chr5 (348-412)||(1501404-1501468)
chr5 (369-430)||(7886376-7886437)
[»] chr2 (2 HSPs)
chr2 (346-446)||(13922183-13922283)
chr2 (370-438)||(11828979-11829047)
[»] chr7 (6 HSPs)
chr7 (347-446)||(496682-496781)
chr7 (348-446)||(11765707-11765805)
chr7 (346-446)||(48057700-48057800)
chr7 (370-446)||(42535215-42535291)
chr7 (348-446)||(2286458-2286556)
chr7 (370-446)||(25185934-25186010)
[»] chr3 (5 HSPs)
chr3 (352-446)||(49786397-49786491)
chr3 (348-446)||(8152977-8153077)
chr3 (343-446)||(47940821-47940924)
chr3 (348-446)||(8436897-8436995)
chr3 (354-446)||(48778974-48779066)
[»] chr6 (1 HSPs)
chr6 (346-446)||(33594520-33594620)
[»] chr8 (2 HSPs)
chr8 (353-446)||(3780360-3780453)
chr8 (370-446)||(4076945-4077021)


Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 20 - 287
Target Start/End: Original strand, 39825790 - 39826057
Alignment:
Q  20 ttaggtaggtatagaaatagaactattttgtttacctttgaggctgaaaatattgcagaacatatatacctacctaactataggttgccaaggttgatac 119  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39825790 ttaggtaggtatagaaatacaactattttgtttacctttgaggctgaaaatattgcagaacatatatacctacctaactataggttgccaaggttgatac 39825889  T
Q  120 ggcaagaaagaaagcttggatatgatttttaattttgattatatttaacatttggacaagtacaaattcgtatcctcaacaacacttttttattgagcta 219  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39825890 ggcaagaaagaaagcttggatatggtttttaattttgattatatttaacatttggacaagtacaaattcgtatcctcaacaacacttttttattgagcta 39825989  T
Q  220 caatacaggtttaacagtcaagattaatttggctgcacaggtgcaacaattatagagtccttagattg 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39825990 caatacaggtttaacagtcaagattaatttggctgcacaggtgcaacaattatagagtccttagattg 39826057  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 345 - 446
Target Start/End: Complemental strand, 52055250 - 52055149
Alignment:
Q  345 taagagtggtgatacatatacatctataggtggtatacacacttaaaccttcacataaacatgtgacacgtgttctaaaacccacaaacactttatctct 444  Q
    |||||||||||||||||  ||||  |||||||| ||||||||||||||||  ||| |||||||||||| |||  ||| | |||||||||||||| |||||    
T  52055250 taagagtggtgatacatgcacattcataggtggcatacacacttaaacctctacacaaacatgtgacatgtggcctagaccccacaaacactttgtctct 52055151  T
Q  445 ct 446  Q
    ||    
T  52055150 ct 52055149  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 347
Target Start/End: Original strand, 39826057 - 39826095
Alignment:
Q  309 gaaatgccaattacatacgcgcgacaataattatattaa 347  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  39826057 gaaatgcgaattacatacgcgcgacaataattatattaa 39826095  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 412
Target Start/End: Original strand, 49866672 - 49866714
Alignment:
Q  370 ataggtggtatacacacttaaaccttcacataaacatgtgaca 412  Q
    ||||||||||||||| |||||||||||||| ||| ||||||||    
T  49866672 ataggtggtatacacgcttaaaccttcacacaaatatgtgaca 49866714  T

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Target: chr1 (Bit Score: 74; Significance: 9e-34; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 345 - 446
Target Start/End: Original strand, 51787269 - 51787370
Alignment:
Q  345 taagagtggtgatacatatacatctataggtggtatacacacttaaaccttcacataaacatgtgacacgtgttctaaaacccacaaacactttatctct 444  Q
    ||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||| |||||    
T  51787269 taagagtggtgatacatgtacatccataggtggcatacacacttaaaccttcacataaacatgtgacacgtgctctagaccccacaaacactttgtctct 51787368  T
Q  445 ct 446  Q
    ||    
T  51787369 ct 51787370  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 346 - 446
Target Start/End: Complemental strand, 20186942 - 20186842
Alignment:
Q  346 aagagtggtgatacatatacatctataggtggtatacacacttaaaccttcacataaacatgtgacacgtgttctaaaacccacaaacactttatctctc 445  Q
    |||||||||||||||| |||| | |||||||| |||||||||||||||| |||||||||||||||||||||| ||| | |||||||||||||| ||||||    
T  20186942 aagagtggtgatacatgtacacccataggtggcatacacacttaaacctccacataaacatgtgacacgtgtcctagatcccacaaacactttgtctctc 20186843  T
Q  446 t 446  Q
    |    
T  20186842 t 20186842  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 348 - 446
Target Start/End: Original strand, 30339636 - 30339734
Alignment:
Q  348 gagtggtgatacatatacatctataggtggtatacacacttaaaccttcacataaacatgtgacacgtgttctaaaacccacaaacactttatctctct 446  Q
    |||||||||||||| |||| | |||||||| ||||||||||||||||  ||||||||||||||||||||| ||| | |||||||||||||| |||||||    
T  30339636 gagtggtgatacatgtacacccataggtggcatacacacttaaacctctacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctct 30339734  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 417
Target Start/End: Complemental strand, 9673062 - 9672999
Alignment:
Q  354 tgatacatatacatctataggtggtatacacacttaaaccttcacataaacatgtgacacgtgt 417  Q
    |||||||| |||| |||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  9673062 tgatacatgtacacctataggtggcatacacacttaaacctccacataaacatgtgacacgtgt 9672999  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 446
Target Start/End: Complemental strand, 43740472 - 43740408
Alignment:
Q  382 cacacttaaaccttcacataaacatgtgacacgtgttctaaaacccacaaacactttatctctct 446  Q
    ||||||||||||| |||| |||||||||| | |||  ||||| | |||||||||||| |||||||    
T  43740472 cacacttaaacctccacacaaacatgtgatatgtggcctaaacctcacaaacactttgtctctct 43740408  T

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Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 349 - 446
Target Start/End: Complemental strand, 38280371 - 38280274
Alignment:
Q  349 agtggtgatacatatacatctataggtggtatacacacttaaaccttcacataaacatgtgacacgtgttctaaaacccacaaacactttatctctct 446  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||| | |||||||||||||| |||||||    
T  38280371 agtggtgatacatgtacatccataggtggtatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctct 38280274  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 346 - 446
Target Start/End: Complemental strand, 25956061 - 25955961
Alignment:
Q  346 aagagtggtgatacatatacatctataggtggtatacacacttaaaccttcacataaacatgtgacacgtgttctaaaacccacaaacactttatctctc 445  Q
    ||||||||||||||||  |||   |||||||| ||||||| |||||||| |||| |||||||||||| |||  ||| | |||||||||||||| ||||||    
T  25956061 aagagtggtgatacatgcacactcataggtggcatacacatttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttgtctctc 25955962  T
Q  446 t 446  Q
    |    
T  25955961 t 25955961  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 412
Target Start/End: Complemental strand, 1501468 - 1501404
Alignment:
Q  348 gagtggtgatacatatacatctataggtggtatacacacttaaaccttcacataaacatgtgaca 412  Q
    ||||||||||||||  | ||| |||||||  |||||||||||||||| ||||||||||| |||||    
T  1501468 gagtggtgatacatgcagatccataggtgacatacacacttaaacctccacataaacatatgaca 1501404  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 430
Target Start/End: Original strand, 7886376 - 7886437
Alignment:
Q  369 tataggtggtatacacacttaaaccttcacataaacatgtgacacgtgttctaaaacccaca 430  Q
    ||||||||  |||||||||||||||| |||| |||||||||||| |||  ||||| ||||||    
T  7886376 tataggtgacatacacacttaaacctccacacaaacatgtgacatgtggcctaaatcccaca 7886437  T

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Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 346 - 446
Target Start/End: Original strand, 13922183 - 13922283
Alignment:
Q  346 aagagtggtgatacatatacatctataggtggtatacacacttaaaccttcacataaacatgtgacacgtgttctaaaacccacaaacactttatctctc 445  Q
    |||||||||||||||| |||||| |||||||| |||||||||||||||| ||| |||||||||||||||||| ||| | |||||||||||||| ||||||    
T  13922183 aagagtggtgatacatgtacatccataggtggcatacacacttaaacctccacgtaaacatgtgacacgtgtcctagaccccacaaacactttgtctctc 13922282  T
Q  446 t 446  Q
    |    
T  13922283 t 13922283  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 370 - 438
Target Start/End: Original strand, 11828979 - 11829047
Alignment:
Q  370 ataggtggtatacacacttaaaccttcacataaacatgtgacacgtgttctaaaacccacaaacacttt 438  Q
    |||||||| |||||||||||||||| |||||||| |||||||| |||| ||| | ||||||||||||||    
T  11828979 ataggtggcatacacacttaaacctccacataaatatgtgacatgtgtcctagaccccacaaacacttt 11829047  T

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Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 347 - 446
Target Start/End: Original strand, 496682 - 496781
Alignment:
Q  347 agagtggtgatacatatacatctataggtggtatacacacttaaaccttcacataaacatgtgacacgtgttctaaaacccacaaacactttatctctct 446  Q
    ||||||||||||||| |||||| |||||||| |||||||||||||||| ||||||||||| |||||||||| ||| | |||||||||||||| |||||||    
T  496682 agagtggtgatacatgtacatccataggtggcatacacacttaaacctccacataaacatatgacacgtgtcctagaccccacaaacactttgtctctct 496781  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 348 - 446
Target Start/End: Original strand, 11765707 - 11765805
Alignment:
Q  348 gagtggtgatacatatacatctataggtggtatacacacttaaaccttcacataaacatgtgacacgtgttctaaaacccacaaacactttatctctct 446  Q
    |||||||||||||| |||||| |||||||| |||||||||||||||| |||||||||||||||||||||| ||  | |||||||||||||| |||||||    
T  11765707 gagtggtgatacatgtacatccataggtggcatacacacttaaacctccacataaacatgtgacacgtgtccttgaccccacaaacactttgtctctct 11765805  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 346 - 446
Target Start/End: Complemental strand, 48057800 - 48057700
Alignment:
Q  346 aagagtggtgatacatatacatctataggtggtatacacacttaaaccttcacataaacatgtgacacgtgttctaaaacccacaaacactttatctctc 445  Q
    |||||||||||||||| |||| | |||||||| ||||| | |||||| | |||||||||||||||||||||| ||| | |||||||||||||| ||||||    
T  48057800 aagagtggtgatacatgtacacccataggtggcatacatatttaaacttccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctc 48057701  T
Q  446 t 446  Q
    |    
T  48057700 t 48057700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 370 - 446
Target Start/End: Complemental strand, 42535291 - 42535215
Alignment:
Q  370 ataggtggtatacacacttaaaccttcacataaacatgtgacacgtgttctaaaacccacaaacactttatctctct 446  Q
    |||||||  |||||||||||||||| ||||||||||||||||||||||  || | |||||||||||||| |||||||    
T  42535291 ataggtgacatacacacttaaacctccacataaacatgtgacacgtgtcttatatcccacaaacactttgtctctct 42535215  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 348 - 446
Target Start/End: Original strand, 2286458 - 2286556
Alignment:
Q  348 gagtggtgatacatatacatctataggtggtatacacacttaaaccttcacataaacatgtgacacgtgttctaaaacccacaaacactttatctctct 446  Q
    |||| |||||||||  ||| |||| ||||| |||||||||||||||| |||| |||||||||||| |||  ||| | |||||||||||||| |||||||    
T  2286458 gagtagtgatacatgcacacctattggtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttgtctctct 2286556  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 446
Target Start/End: Complemental strand, 25186010 - 25185934
Alignment:
Q  370 ataggtggtatacacacttaaaccttcacataaacatgtgacacgtgttctaaaacccacaaacactttatctctct 446  Q
    |||||||  |||||||||||||||| |||| |||||||||||| |||  ||| | |||||||| |||||||||||||    
T  25186010 ataggtgacatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaatactttatctctct 25185934  T

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Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 352 - 446
Target Start/End: Original strand, 49786397 - 49786491
Alignment:
Q  352 ggtgatacatatacatctataggtggtatacacacttaaaccttcacataaacatgtgacacgtgttctaaaacccacaaacactttatctctct 446  Q
    |||||||||| |||| | |||||||| |||||||||||||||| |||||||||||||||||||||| ||| | |||||||||||||| |||||||    
T  49786397 ggtgatacatgtacacccataggtggcatacacacttaaacctccacataaacatgtgacacgtgtcctagaccccacaaacactttgtctctct 49786491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 348 - 446
Target Start/End: Original strand, 8152977 - 8153077
Alignment:
Q  348 gagtggtgatacatat--acatctataggtggtatacacacttaaaccttcacataaacatgtgacacgtgttctaaaacccacaaacactttatctctc 445  Q
    ||||||||||||||||  ||| |||||||||| |||||||| ||||||| ||||||||||||||||| |||  ||| |  ||||||||||||| ||||||    
T  8152977 gagtggtgatacatatgcacacctataggtggcatacacacctaaacctccacataaacatgtgacatgtggcctagactccacaaacactttgtctctc 8153076  T
Q  446 t 446  Q
    |    
T  8153077 t 8153077  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 343 - 446
Target Start/End: Original strand, 47940821 - 47940924
Alignment:
Q  343 attaagagtggtgatacatatacatctataggtggtatacacacttaaaccttcacataaacatgtgacacgtgttctaaaacccacaaacactttatct 442  Q
    |||| |||| |||||||||  ||| |||| ||||| |||||||||||||||| |||| |||||||||||| |||  ||| | |||||||||||||| |||    
T  47940821 attatgagtagtgatacatgcacacctattggtggcatacacacttaaacctccacacaaacatgtgacatgtggcctagaccccacaaacactttgtct 47940920  T
Q  443 ctct 446  Q
    ||||    
T  47940921 ctct 47940924  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 348 - 446
Target Start/End: Complemental strand, 8436995 - 8436897
Alignment:
Q  348 gagtggtgatacatatacatctataggtggtatacacacttaaaccttcacataaacatgtgacacgtgttctaaaacccacaaacactttatctctct 446  Q
    ||||||||||| || |||| | |||||||| ||||||| ||||||||  ||||||| || ||||||||||  || | |||||||||||||| |||||||    
T  8436995 gagtggtgatatatgtacacccataggtggcatacacatttaaacctctacataaatatatgacacgtgtcttagaccccacaaacactttgtctctct 8436897  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 446
Target Start/End: Complemental strand, 48779066 - 48778974
Alignment:
Q  354 tgatacatatacatctataggtggtatacacacttaaaccttcacataaacatgtgacacgtgttctaaaacccacaaacactttatctctct 446  Q
    ||||||||  ||| |||||||||| |||| || |||||| | |||||||| |||||||| ||| |||| |  ||| |||||||||||||||||    
T  48779066 tgatacatgcacacctataggtggcatactcatttaaacatccacataaatatgtgacatgtggtctagactccataaacactttatctctct 48778974  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 346 - 446
Target Start/End: Complemental strand, 33594620 - 33594520
Alignment:
Q  346 aagagtggtgatacatatacatctataggtggtatacacacttaaaccttcacataaacatgtgacacgtgttctaaaacccacaaacactttatctctc 445  Q
    |||||| |||||||||  ||||| || ||||| ||||||||||||||||||||| |||||||||||| |||  ||| | |||||||| ||||| ||||||    
T  33594620 aagagtagtgatacatgcacatccattggtggcatacacacttaaaccttcacacaaacatgtgacatgtggcctagaccccacaaatactttgtctctc 33594521  T
Q  446 t 446  Q
    |    
T  33594520 t 33594520  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 353 - 446
Target Start/End: Complemental strand, 3780453 - 3780360
Alignment:
Q  353 gtgatacatatacatctataggtggtatacacacttaaaccttcacataaacatgtgacacgtgttctaaaacccacaaacactttatctctct 446  Q
    ||||||||| |||||| |||||||| ||||||||| |||||| |||| |||||||||||| ||   ||||| || | ||||||||| |||||||    
T  3780453 gtgatacatgtacatccataggtggcatacacactcaaacctccacacaaacatgtgacatgtagcctaaacccgagaaacactttgtctctct 3780360  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 446
Target Start/End: Complemental strand, 4077021 - 4076945
Alignment:
Q  370 ataggtggtatacacacttaaaccttcacataaacatgtgacacgtgttctaaaacccacaaacactttatctctct 446  Q
    |||||||| |||||||||||||||| |||| |||||||||||| ||   ||| | |||||||||| ||| |||||||    
T  4077021 ataggtggcatacacacttaaacctccacacaaacatgtgacatgtagcctagaccccacaaacaatttgtctctct 4076945  T

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