View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13015_low_6 (Length: 284)
Name: NF13015_low_6
Description: NF13015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13015_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 61 - 269
Target Start/End: Complemental strand, 2688104 - 2687895
Alignment:
| Q |
61 |
cctaatgcaatacatcccaatgaaaatcctaatttgctcatcttnnnnnnnnnnnnnn-tgctagaagggttcaacaactagtgataaaatgtgtttttt |
159 |
Q |
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| T |
2688104 |
cctaatgcaatacatcccaatgaaaatcctaatttgcacatcttaaaaaaaaaaaaaaatgctagaagggttcaacaactagtgataaaatgtgtttttt |
2688005 |
T |
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| Q |
160 |
gatatctctatcttgtataccaaacccatcaccatttaaataaagagtatgggcaacacgtgctgcatttcttgcttgattaaaaaatggttccataaaa |
259 |
Q |
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| T |
2688004 |
tatatctcgatcttggataccaaacccatcaccatttaaataaagagtatgggcgacacgtgctgcatttcttgcttgattaaaaaatggttccataaaa |
2687905 |
T |
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| Q |
260 |
gcatcttgat |
269 |
Q |
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|||||||||| |
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| T |
2687904 |
gcatcttgat |
2687895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 2682654 - 2682562
Alignment:
| Q |
12 |
tcttatcaaataatacaagaatcttttatcattcaaaattccttacatacctaatgcaatacatcccaatgaaaatcctaatttgctcatctt |
104 |
Q |
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|||||| ||||||||||||||||||||| |||| ||||||| || | ||||||||||| ||| ||||||| |||||||||||| |||||| |
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| T |
2682654 |
tcttattaaataatacaagaatcttttaccattgaaaattctttcaaatcctaatgcaattcattgcaatgaatatcctaatttgcacatctt |
2682562 |
T |
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