View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13016_high_13 (Length: 227)
Name: NF13016_high_13
Description: NF13016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13016_high_13 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 2 - 227
Target Start/End: Complemental strand, 5388632 - 5388393
Alignment:
| Q |
2 |
gtcatgttcaatttattttgaatatcagcatattgctttacttttcattcttctagatagtatata--------------ccagcactatttgtagataa |
87 |
Q |
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| T |
5388632 |
gtcatgttcaatttattttgaatatcagcatattgccttacttttcattcttctagatagtatatagtatatactatataccagcactatttctagataa |
5388533 |
T |
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| Q |
88 |
tatatatttagacattgatttcaggaaaaagcactctagcatgcgctttgagtcgaagcttgcactcgagaggaaagttaacatatatccttgatggtga |
187 |
Q |
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| T |
5388532 |
tatatatttagacattgatttcaggaaaaagcactctagcatgcgctttgagtcgaagcttgcactcgagaggaaagttaacatatatccttgatggtga |
5388433 |
T |
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| Q |
188 |
taatattcgacatggtctaaaccgtgatcttagttttaga |
227 |
Q |
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| T |
5388432 |
taatattcgacatggtctaaaccgtgatcttagttttaga |
5388393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 95 - 227
Target Start/End: Original strand, 39964237 - 39964369
Alignment:
| Q |
95 |
ttagacattgatttcaggaaaaagcactctagcatgcgctttgagtcgaagcttgcactcgagaggaaagttaacatatatccttgatggtgataatatt |
194 |
Q |
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|||| |||| |||||||||||||| ||||| ||||| |||||||||| |||||||||||| |||||||| | || || |||||||| ||||| |||||| |
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| T |
39964237 |
ttagtcattaatttcaggaaaaagtactcttgcatgtgctttgagtcaaagcttgcactccagaggaaaactgacttacatccttgacggtgacaatatt |
39964336 |
T |
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| Q |
195 |
cgacatggtctaaaccgtgatcttagttttaga |
227 |
Q |
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| T |
39964337 |
cggcatggtctaaaccgtgatcttagttttaga |
39964369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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