View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13016_high_7 (Length: 296)
Name: NF13016_high_7
Description: NF13016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13016_high_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 5387982 - 5388251
Alignment:
| Q |
19 |
tcacacacagctagtggcacgtctaagaaaacctacaagatggggttgagaaatgtatgattgcataggtaatgaagagcattttgtgttgatcaagaac |
118 |
Q |
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| T |
5387982 |
tcacacacagctagtggcacgtctaagaaaacctacaacatggggttgagaaatgtatgattgcataggtaatgaagagcattttgtgttgatcaagaac |
5388081 |
T |
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| Q |
119 |
gaatcatagtgttcgcaattgttgcattcaccgacgacaaactaccagcaaaatttggttcacttcaataagtatatgtacctcaataaaatctcctttg |
218 |
Q |
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| T |
5388082 |
gaatcatagtgttcgcaattgttgcattcaccgacgacaaactaccagca--------ttcacttcaataagtatatgtacctcaataaaatctcctttg |
5388173 |
T |
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| Q |
219 |
ggcagtagagccctgcaagcatctctatccttttggtatggtgatatcaaactggtgatgcaaataactcctgcatct |
296 |
Q |
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| T |
5388174 |
ggcagtagagccctgcaagcatctctatccttttggtatggtgatatcaaactggtgatgcaaataactcctgcatct |
5388251 |
T |
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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 197 - 285
Target Start/End: Complemental strand, 39964628 - 39964540
Alignment:
| Q |
197 |
tacctcaataaaatctcctttgggcagtagagccctgcaagcatctctatccttttggtatggtgatatcaaactggtgatgcaaataa |
285 |
Q |
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||||||||| ||||| |||| |||||||| || ||||||||||||||||||||||| || |||||||||||||| ||||||||||||| |
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| T |
39964628 |
tacctcaatgaaatccccttctggcagtagtgctctgcaagcatctctatccttttgatagggtgatatcaaactagtgatgcaaataa |
39964540 |
T |
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