View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13016_low_10 (Length: 265)
Name: NF13016_low_10
Description: NF13016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13016_low_10 |
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| [»] scaffold0091 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 3522208 - 3521956
Alignment:
| Q |
1 |
ctaaaggcaaggcaaatccaggtctacttaataagattctcttggagaaattgaattcgaaaagccgatgttaatagatttctatatgcacgccttcaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||| |||||||||||||| |
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| T |
3522208 |
ctaaaggcaaggcaaatccaggtctacttaataagattctcttggagaaatcgaattcgaaaagctgatgttaatagattgctatgtgcacgccttcaat |
3522109 |
T |
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| Q |
101 |
ctgaattgtcggtgctacatagttactcatgcgcttaacatacaagcgttgatcatgataaaatttcacctgaccactacacaaattgcaaatgaaatat |
200 |
Q |
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| T |
3522108 |
ctgaattgtcggtgctacatagttactcatgcgcttaacatacaagtgttgatcatgataaaatttcacctgaccactacacaaattgcaaatgaaatat |
3522009 |
T |
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| Q |
201 |
aaaattggaaggtttttgtgttgctcattgcaatacaaggttagttacatatt |
253 |
Q |
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| T |
3522008 |
aaaattggaaggtttttgtgttgctcattgcaatacaaggttagttaaatatt |
3521956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 23047536 - 23047420
Alignment:
| Q |
1 |
ctaaaggcaaggcaaatccaggtctacttaataagattctcttggagaaattgaattcgaaaagccgatgttaatagatttctatatgcacgccttcaat |
100 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||| | ||||||||| | | |||| |
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| T |
23047536 |
ctaaaggcaaggcaaacccaggtctacttaacaagattctcttggagaaattgaattcataaagctgatgttaatagactgttatatgcacacttacaat |
23047437 |
T |
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| Q |
101 |
ctgaattgtcggtgcta |
117 |
Q |
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| T |
23047436 |
ctgaaatgtcagtgcta |
23047420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 33267918 - 33267954
Alignment:
| Q |
88 |
gcacgccttcaatctgaattgtcggtgctacatagtt |
124 |
Q |
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| T |
33267918 |
gcacgccttcaatctgaagtgtcggtgctacatagtt |
33267954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 124
Target Start/End: Original strand, 9571852 - 9571883
Alignment:
| Q |
93 |
ccttcaatctgaattgtcggtgctacatagtt |
124 |
Q |
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| T |
9571852 |
ccttcaatctgaattgtcggtgctacatagtt |
9571883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 5228235 - 5228267
Alignment:
| Q |
90 |
acgccttcaatctgaattgtcggtgctacatag |
122 |
Q |
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| T |
5228235 |
acgccttcaatctgaagtgtcggtgctacatag |
5228267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 121
Target Start/End: Original strand, 23559747 - 23559779
Alignment:
| Q |
89 |
cacgccttcaatctgaattgtcggtgctacata |
121 |
Q |
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| T |
23559747 |
cacgccttcaatatgaattgtcggtgctacata |
23559779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0091 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0091
Description:
Target: scaffold0091; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 7652 - 7684
Alignment:
| Q |
90 |
acgccttcaatctgaattgtcggtgctacatag |
122 |
Q |
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| T |
7652 |
acgccttcaatctgaagtgtcggtgctacatag |
7684 |
T |
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