View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13016_low_2 (Length: 432)
Name: NF13016_low_2
Description: NF13016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13016_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 13 - 421
Target Start/End: Original strand, 42158432 - 42158841
Alignment:
| Q |
13 |
taaataggatagaagaagttcaaagactttctggcatcggaaacagctttcctctcttccataacaaccttaagatgatatttgaccaatttcctaaagg |
112 |
Q |
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| T |
42158432 |
taaataggatagaagaagttcaaagactttctggcatcggaaacagctttcctatcttcggtaacaaccttaagatgatatttgaccaatttcctaaagg |
42158531 |
T |
|
| Q |
113 |
attgcatcaacccagtcaacccagtctctttactctttctcggccaattacgcataatttcatcattacagcccttaaa-ctttttctcaagtcccctca |
211 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42158532 |
attgcatcaacccagtcaacccagtccctttactctttctcggccatttacgcatgatttcatcattacagcccttaaaactttttctcaagtcccctca |
42158631 |
T |
|
| Q |
212 |
gttttttcaaggtgcgagaatcgtttgtagcattctcgaacatgagaatcttaagagaatcaagccaaggtccacgaaaacgaaatgtatggtgaagatc |
311 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42158632 |
gttttttcaaggtgcaagaatcgtttgtagcattctcgaacatgagaatcttaagagaatcaagccaaggtccacgaaaacgaaatgtatggtgaagatc |
42158731 |
T |
|
| Q |
312 |
ttcaagtaacttaacgagtagagagtgttgattgtcaaggagatctaagattgaatggtttttgagaagaagtaaaagttccgccaaggttgtgtatgcc |
411 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42158732 |
ttcaagtaacttaacgagtagaaagcgttgattgtcaaggagatctaagattgaatggttcttgagaagaagtaaaagttccgccaaggttgtgtatgcc |
42158831 |
T |
|
| Q |
412 |
aagcccttca |
421 |
Q |
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|||||||||| |
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| T |
42158832 |
aagcccttca |
42158841 |
T |
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