View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13016_low_3 (Length: 413)
Name: NF13016_low_3
Description: NF13016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13016_low_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 46642027 - 46642437
Alignment:
| Q |
1 |
aattaatggtgcaaattatgtcactgcagaagatgggagagatttccaccggaggaaatccacatgcacgaaatccatgaaggataccacctaaaaatgt |
100 |
Q |
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| T |
46642027 |
aattaatggtgtaaattatgtcactgcagaggattggagagatttccaccgaaggaaatccacatgcacgaaatccatgaaggataccacttaaaaatgt |
46642126 |
T |
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| Q |
101 |
gaatattttcatttgttaagattaattacctaccattcttttatggataacctatatgtcacaccatttaaatgtctaaccaaaccaattacattattat |
200 |
Q |
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| T |
46642127 |
gaatattt--attcgttagtataaattacctactattcttttataggtaacctagatgtcacaccatttaaacgtctaaccaaaccaattacattattat |
46642224 |
T |
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| Q |
201 |
tttataagagtaatgtcaatttgcagcacaacaaacactaacttccaatatttctccaacatacacacatttatataaattcgcattcccataacacaaa |
300 |
Q |
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| T |
46642225 |
tttataagagtaacgtcaatttgcagcacaacaaacactaacttccaatatttctccaacatacacacatttatataaattcacattcccataacacaaa |
46642324 |
T |
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| Q |
301 |
atcaaacccatccattatcagtaatggaatcctcttatagtctacaattcttaattaccttcattgtcattctcatatccatcaacccctcatcacacca |
400 |
Q |
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| T |
46642325 |
atcaaacccatccattatcggtaatggaatcctcttatagtccaaaactcttaatttccttcattgtcattctcatatccatcaacccctcatcacacca |
46642424 |
T |
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| Q |
401 |
atctctaccacca |
413 |
Q |
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| T |
46642425 |
atctctaccacca |
46642437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 167 - 413
Target Start/End: Original strand, 46639893 - 46640145
Alignment:
| Q |
167 |
tttaaatgtctaaccaaaccaattac---attattattttataagagtaatgtcaatttgcagcacaacaaacactaacttccaatatttctccaacata |
263 |
Q |
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| T |
46639893 |
tttaaatgtctaaccaaaccaatcactctattattattttataagagtaatgtcaatttgcagcacaacaaacagaaacttccaaaatttctccaacata |
46639992 |
T |
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| Q |
264 |
cacacat---ttatataaattcgcattcccataacacaaaatcaaacccatccattatcagtaatggaatcctcttatagtctacaattcttaattacct |
360 |
Q |
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| T |
46639993 |
cacacaccccttatataaattcacattcccataacacaaaatcaaacccatccattatcagtaatggaatcctcttatagtctacaattcttaattacct |
46640092 |
T |
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| Q |
361 |
tcattgtcattctcatatccatcaacccctcatcacaccaatctctaccacca |
413 |
Q |
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| T |
46640093 |
tcattgtcattctcatatccatcaacccctcatcacaccaatctctaccacca |
46640145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 29966110 - 29966171
Alignment:
| Q |
1 |
aattaatggtgcaaattatgtcactgcagaagatgggagagatttccaccggaggaaatcca |
62 |
Q |
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| T |
29966110 |
aattaatggtgcagattgtatcactgcagaaaactggagagattttcacaggaggaaatcca |
29966171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 30008688 - 30008627
Alignment:
| Q |
1 |
aattaatggtgcaaattatgtcactgcagaagatgggagagatttccaccggaggaaatcca |
62 |
Q |
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| T |
30008688 |
aattaatggtgcagattgtatcactgcagaaaactggagagattttcacaggaggaaatcca |
30008627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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