View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13016_low_5 (Length: 349)
Name: NF13016_low_5
Description: NF13016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13016_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 13 - 331
Target Start/End: Complemental strand, 43386667 - 43386351
Alignment:
| Q |
13 |
atactagttgatggaggggggacatatggactcttgtgtcataattataaactgtatatggtattaatggacgtatatataaatcacaatcatatatgta |
112 |
Q |
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| T |
43386667 |
atactagttgatggaggggggacat--ggactcttgtgtcataattataaactgtatatggttttaatggacgtatatataaatcacaatcatatatgta |
43386570 |
T |
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| Q |
113 |
tgtatgcatttattgtgtgcttaattagcaaacaaactaaatggtgtaccattaaataaaccctacttgttgagctagcgtatatatgtgtggtttccat |
212 |
Q |
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| T |
43386569 |
tgtatgcatttcttgtgtgcttaattagcaaacaaattaaatggtgtacaattaaataaaccctacttgttgagctagcgtatatatgtgtggtttccat |
43386470 |
T |
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| Q |
213 |
ttgtttgtcctggaatcgagagaaaagtagtagcaagttgatgtttcaatttgctgcagttaagacaattaattattctttctctataaacatatatgag |
312 |
Q |
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| T |
43386469 |
ttgtttgtcctggaatcgagagaaaagtagtagcaagttgatgtttcaatttgctgcggttaagacaattaattattctttctctataaacatatatgag |
43386370 |
T |
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| Q |
313 |
tgtatgtatatgtaagatc |
331 |
Q |
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| T |
43386369 |
tatatgtatatgtaagatc |
43386351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 208
Target Start/End: Complemental strand, 50122978 - 50122943
Alignment:
| Q |
173 |
ccctacttgttgagctagcgtatatatgtgtggttt |
208 |
Q |
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| T |
50122978 |
ccctacttgttgagctagcgtatatatgtgtggttt |
50122943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 204
Target Start/End: Original strand, 31951404 - 31951435
Alignment:
| Q |
173 |
ccctacttgttgagctagcgtatatatgtgtg |
204 |
Q |
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| T |
31951404 |
ccctacttgttgagctagcgtatatatgtgtg |
31951435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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