View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13016_low_8 (Length: 279)
Name: NF13016_low_8
Description: NF13016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13016_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 15 - 264
Target Start/End: Original strand, 36262317 - 36262566
Alignment:
| Q |
15 |
aaaaatatatcaatatgagaatttgagaaccttactaacctgcatattgttgtatctattgaaggtcttactgcatatggagcaagcaaactgcataggt |
114 |
Q |
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| T |
36262317 |
aaaaatatatcaatatgagaatttgagaaccttactaacctgcatattgttgtatctattgaaggtcttactgcatatggagcaagcaaactgcataggt |
36262416 |
T |
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| Q |
115 |
ccaacaagaatctgagcaggagttggtatccaaaaccttctctcttccttaaaacaaaaaccatgcacgtttttcttcaattcttcttccttaacacaat |
214 |
Q |
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| T |
36262417 |
ccaacaagaatctgagcaggagttggtatccaaaaccttctctcttccttaaaacaaaaaccatgcacgtttttcttcaattcttcttccttaacacaat |
36262516 |
T |
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| Q |
215 |
caaaaaccttattcttctcatcatgttcatcagattcatgacctcctatg |
264 |
Q |
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| T |
36262517 |
caaaaaccttattcttctcatcatgttcatcagattcatgaccccctatg |
36262566 |
T |
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Back To:
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Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 153
Target Start/End: Complemental strand, 19331269 - 19331164
Alignment:
| Q |
48 |
actaacctgcatattgttgtatctattgaaggtcttactgcatatggagcaagcaaactgcataggtccaacaagaatctgagcaggagttggtatccaa |
147 |
Q |
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|||||||||||| ||||| || ||||||||||| || ||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
19331269 |
actaacctgcatgttgttatacctattgaaggttttgttgcatatggagcaagcaaattgcataggtccaacaaggatctgtgcaggagttggtatccaa |
19331170 |
T |
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| Q |
148 |
aacctt |
153 |
Q |
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|||||| |
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| T |
19331169 |
aacctt |
19331164 |
T |
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