View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13017_high_13 (Length: 244)
Name: NF13017_high_13
Description: NF13017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13017_high_13 |
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| [»] scaffold0068 (2 HSPs) |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: scaffold0068 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 12511 - 12293
Alignment:
| Q |
18 |
ttataaacacctatcatttccttcattcacacgtattcatttgttaccactcttgtccaactatatactttcttacttaatttcttagcatgtgcacata |
117 |
Q |
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| T |
12511 |
ttatagacacctatcatttccttcattcacacgtattcaattgttaccactcttgtccaactatatactttcttacttgatttgttagcatgtacacata |
12412 |
T |
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| Q |
118 |
acttcatcaatagacttaacattgtaaaagactatactaatactacagtttcgctacatcggtaatgtacataacttcataagtaacattttaatcatac |
217 |
Q |
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| T |
12411 |
acttcatcaatagacttaacattgtaaaaggc--------tactacagtttcactacatcaataatgtacataactttataagtaacattttaatcatac |
12320 |
T |
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| Q |
218 |
atagtcagagtctaaaccgactcaaaa |
244 |
Q |
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||| ||||||||||||||||||||||| |
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| T |
12319 |
atattcagagtctaaaccgactcaaaa |
12293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 27636 - 27570
Alignment:
| Q |
24 |
acacctatcatttccttcattcacacgtattcatttgttaccactct--tgtccaactatatacttt |
88 |
Q |
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| T |
27636 |
acacctatcatttccttcatttacacatattaatttgttaccactctcgtgtccaactatacacttt |
27570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 8e-82; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 21701399 - 21701617
Alignment:
| Q |
18 |
ttataaacacctatcatttccttcattcacacgtattcatttgttaccactcttgtccaactatatactttcttacttaatttcttagcatgtgcacata |
117 |
Q |
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| T |
21701399 |
ttatagacacctatcatttccttcattcacacgtattcaattgttaccactcttgtccaactatatactttcttacttgatttgttagcatgtacacata |
21701498 |
T |
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| Q |
118 |
acttcatcaatagacttaacattgtaaaagactatactaatactacagtttcgctacatcggtaatgtacataacttcataagtaacattttaatcatac |
217 |
Q |
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| T |
21701499 |
acttcatcaatagacttaacattgtaaaaggc--------tactacagtttcactacatcaataatgtacataactttataagtaacattttaatcatac |
21701590 |
T |
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| Q |
218 |
atagtcagagtctaaaccgactcaaaa |
244 |
Q |
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| T |
21701591 |
atattcagagtctaaaccgactcaaaa |
21701617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 42731748 - 42731930
Alignment:
| Q |
19 |
tataaacacctatcatttccttcattcacacgtattcatttgttaccactcttgtccaactatatactttcttacttaatttcttagcatgtgcacataa |
118 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
42731748 |
tatagacacctatcatttccttcattcacacgtattcatttgttaccactcttgtccaactatatactttcttacttgatttgttagcatgtgcacataa |
42731847 |
T |
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| Q |
119 |
cttcatcaatagacttaacattgtaaaagactatactaatactacagtttcgctacatcggtaatgtacataacttcataagtaacatttt |
209 |
Q |
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| T |
42731848 |
cttcatcaatagacttaacattgtaaaagac--------tactggagtttcactacatcagtaatgtacataacttcataagtaacatttt |
42731930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 21686274 - 21686340
Alignment:
| Q |
24 |
acacctatcatttccttcattcacacgtattcatttgttaccactct--tgtccaactatatacttt |
88 |
Q |
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| T |
21686274 |
acacctatcatttccttcatttacacatattaatttgttaccactctcgtgtccaactatacacttt |
21686340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 244
Target Start/End: Original strand, 42734592 - 42734631
Alignment:
| Q |
205 |
attttaatcatacatagtcagagtctaaaccgactcaaaa |
244 |
Q |
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| T |
42734592 |
attttaatcatacatagtcagattctaaaccgactcaaaa |
42734631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 42727063 - 42727144
Alignment:
| Q |
33 |
atttccttcattcacacgtattcatttgt--taccactcttgtccaactatatactttcttacttaatttcttagcatgtgca |
113 |
Q |
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||||||||||||||||| |||||||||| | || || ||||||||||||||||||| |||||| |||| |||| ||||||| |
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| T |
42727063 |
atttccttcattcacacaaattcatttgttgtccctcttttgtccaactatatacttt-ttacttgatttgttagtatgtgca |
42727144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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