View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13017_high_14 (Length: 244)
Name: NF13017_high_14
Description: NF13017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13017_high_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 133 - 217
Target Start/End: Original strand, 4378955 - 4379039
Alignment:
| Q |
133 |
cacaagagccctatttccaataatagggcgcaaaaatcttaatgataaaagggtccttaactcaaattacatcatataactattt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4378955 |
cacaagagccctatttccaataatagggcgcaaaaatcttaatgataaaagggtccttaactcaaattacatcatataactattt |
4379039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 4378813 - 4378851
Alignment:
| Q |
1 |
tcctcctccacaaagttcactacgaatttcactcttctc |
39 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
4378813 |
tcctcctcaacaaagttcactacgactttcactcttctc |
4378851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University