View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13017_low_10 (Length: 336)
Name: NF13017_low_10
Description: NF13017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13017_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 20 - 326
Target Start/End: Complemental strand, 10821929 - 10821623
Alignment:
| Q |
20 |
cattgtactaaagctgtagatgagaagcagtcatgggctgaaaaattggatcatccttcaaagcatctactaattcaggccacaatatagctgaaacagt |
119 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10821929 |
cattgtactaaagctgtagataagaagcagtcatgggctgaaaaattggatcatccttcaaagcatctactaattcaggccacaatatagctgaaacagt |
10821830 |
T |
|
| Q |
120 |
ccatgaaccatcacccttaccactttgcctttgattcatataaccaacaccaaccttttcaattgaggtatacactgtccccaacaatggacttccaaat |
219 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10821829 |
ccatgaaccatcacccttgccactttgcctttgattcatataaccaacaccaaccctttcaattgaggtatacactgtccctaacaatggacttccaaat |
10821730 |
T |
|
| Q |
220 |
cccaaatcaacttcactaacaggaaacctttgtcctgaagaaaccaccaagacaggtccatcatcctgtcctaacaccgcctttgcaagcatcaaacctg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10821729 |
cccaaatcaacttcactaacaggaaacctttgtcctgaagaaaccaccaagacaggtccatcatcctgtcctaacaccgcctttgcaagcatcaaacctg |
10821630 |
T |
|
| Q |
320 |
gcctatg |
326 |
Q |
| |
|
||||||| |
|
|
| T |
10821629 |
gcctatg |
10821623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University