View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13017_low_11 (Length: 283)
Name: NF13017_low_11
Description: NF13017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13017_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 54080703 - 54080954
Alignment:
| Q |
1 |
tatgagtcgacatattgtattggaacatgtcataaatcatgcgaatgtgcatgttcaaggggcttcaaccacaagtttttgttcatccaaatccaaatat |
100 |
Q |
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| T |
54080703 |
tatgagtcgacatattgtattggaacatgtcataaatcatgcgaatgtgcatgttcaaggggcttcaaccacaagtttttgttcatccaaatccaaatat |
54080802 |
T |
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| Q |
101 |
gccacgcaaatatgatttcccccactttctagcctcaaacttaaaataatcattccacatgttcacaccaaaacaagagcattcagcagctataa--ata |
198 |
Q |
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| T |
54080803 |
gccacgcaaatatgatttcccccactttctagcctcaaacttaaaataatcattccacatgttcacaccaaaactagagcattcagcggctataaatata |
54080902 |
T |
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| Q |
199 |
cttcaaaacctcttcagagtatcaacaacaaatacactgcataccctctaaa |
250 |
Q |
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| T |
54080903 |
cttcaaaacctcttcagagtatcaacaacaaatacactgcataccctctaaa |
54080954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 14 - 171
Target Start/End: Original strand, 54084071 - 54084228
Alignment:
| Q |
14 |
attgtattggaacatgtcataaatcatgcgaatgtgcatgttcaaggggcttcaaccacaagtttttgttcatccaaatccaaatatgccacgcaaatat |
113 |
Q |
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| T |
54084071 |
attgtattggcacatgccataaatcatgccaatgagcaagttcaaggcgtttcaaccacaagtttttatccatccaaattcaaatatgccacgccaatat |
54084170 |
T |
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| Q |
114 |
gatttcccccactttctagcctcaaacttaaaataatcattccacatgttcacaccaa |
171 |
Q |
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| T |
54084171 |
gatctcctctactttctagcctcaaacttaaaataatcattccgcattttcacaccaa |
54084228 |
T |
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