View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13017_low_14 (Length: 247)
Name: NF13017_low_14
Description: NF13017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13017_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 3 - 235
Target Start/End: Complemental strand, 35117692 - 35117460
Alignment:
| Q |
3 |
tttcctttttgacataaaagtgatatgaaaagggaaattttaggggtgatggaatgtggtaaaatgattaaatctgaatttcattgaaattggactattg |
102 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35117692 |
tttcttttttgacataaaagtgatatgaaaagggaaattttaggggtgatggaatgtggtaaaatgattaaatctgaatttcagtgaaattggactattg |
35117593 |
T |
|
| Q |
103 |
cagatgtctgagcatttcagcagacaactgtctttgtcgggaaagattccatccggccaattcaatagcatgttcgacatgaaaaaatgttggtccaggg |
202 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35117592 |
cagatgtctgagcatttcaacagacaactatctttgtcgggaaagattccatccggccaattcaatagcatgttcgacatgaaaaaatgttggtccaggg |
35117493 |
T |
|
| Q |
203 |
atgcagcttccactaagagccttgcctttgatg |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
35117492 |
atgcagcttccactaagagccttgcctttgatg |
35117460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 3 - 235
Target Start/End: Original strand, 47982503 - 47982744
Alignment:
| Q |
3 |
tttcctttttgacataaaagtgatatgaaaa-gggaaattttaggggtgatggaatgtggtaaaatgattaaatctgaatttcattgaaattggactatt |
101 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||||| | || ||| |||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
47982503 |
tttcttttttgacataaaagtgatatgaaaaagggaaattttaggggtgataggatatggcaaaatgatgaaatctgaatttcattgaaattggactttt |
47982602 |
T |
|
| Q |
102 |
gcagatgtctgagcatttcagcagacaactgtct--------ttgtcgggaaagattccatccggccaattcaatagcatgttcgacatgaaaaaatgtt |
193 |
Q |
| |
|
|||||||||||||||||||| ||||||| | ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
47982603 |
gcagatgtctgagcatttcaacagacaattatctttgtcgccttgtcgggaaagattccatccggccaattcaatagtatgttcgacatgaaaaaatgtt |
47982702 |
T |
|
| Q |
194 |
ggtccagggatgcagcttccactaagagccttgcctttgatg |
235 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
47982703 |
ggtccagggatgcagcttccactaaaagccttgcctttgatg |
47982744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University