View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13017_low_17 (Length: 226)
Name: NF13017_low_17
Description: NF13017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13017_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 35115452 - 35115646
Alignment:
| Q |
18 |
ccattctgatctgcgaattttcgcagatgctacggttgagtatccaagtcttaagaaaagaactttcttcattcccattagcttaacctcaaaccaagcc |
117 |
Q |
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| T |
35115452 |
ccattctgatctgcgaattttcgcagatgctacggttgagtatccaagtcttaagaaaagaactttcttcattcccattagcttaacctcaaaccaagcc |
35115551 |
T |
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| Q |
118 |
tttgtcacaatagacgtagactcgtccattctggagctattgtattgtacaggtgctgtgtagacatgagaaaacatgctccacttcacaggttc |
212 |
Q |
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| T |
35115552 |
tttgtcacaatagacgtagactcgtccattctggagctattgtattgtacaggtgctgtgtagacatgagaaaacatgctccacttcactggttc |
35115646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 47984681 - 47984487
Alignment:
| Q |
18 |
ccattctgatctgcgaattttcgcagatgctacggttgagtatccaagtcttaagaaaagaactttcttcattcccattagcttaacctcaaaccaagcc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
47984681 |
ccattctgatctgcgaattttcgcagatgctacggttgagtatccaagtcttaagaaaagaactttcttcattcccattaacttaacctcaaaccaagcc |
47984582 |
T |
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| Q |
118 |
tttgtcacaatagacgtagactcgtccattctggagctattgtattgtacaggtgctgtgtagacatgagaaaacatgctccacttcacaggttc |
212 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||| ||| || ||||| |
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| T |
47984581 |
tttgtcacaatagatgtagactagtccattctggagctattgtatcatacaagtgctgtgtagacatgataaaacatgctcctcttgactggttc |
47984487 |
T |
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