View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13017_low_3 (Length: 457)
Name: NF13017_low_3
Description: NF13017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13017_low_3 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 13 - 282
Target Start/End: Complemental strand, 46998864 - 46998595
Alignment:
| Q |
13 |
attctcatcactattcaccttcacatgatccattttatcatcgttaactctccattcatcagaactctcgaatccaagactttcagtgcatgacatcaaa |
112 |
Q |
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| T |
46998864 |
attctcatcactattcaccttcacatgatccattttatcatcgttaactctccattcatcagaactctcgaatccaagactttcagtgcatgacatcaaa |
46998765 |
T |
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| Q |
113 |
ccatcaacgaatccaatcgaaggcggatcaggacaattttcagtaatgcttggcttcgaatttaacgtcgttgattcaagaacatttggaaggttgttat |
212 |
Q |
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| T |
46998764 |
ccatcaacgaatccaatcgaaggcggatcaggacaattttcagtaatgcttggcttcgaatttaacgtcgttgattcaagaacatttggaaggttgttat |
46998665 |
T |
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| Q |
213 |
ccgcggtggcagtgacaagagccaaaccagaaacagagtcagattgagtaatagttgtagtggtggtgag |
282 |
Q |
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| T |
46998664 |
ccgcggtggcagtgacaagagccaaaccagaaacagagttagattgagtaatagttgtagtggtggtgag |
46998595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 344 - 457
Target Start/End: Complemental strand, 29568621 - 29568511
Alignment:
| Q |
344 |
tacagaatcaacaagattcaacgatgatcactcataaacagaaacaataaatgattattcaaacataatcaatgattcataatcataataatcttcacac |
443 |
Q |
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| T |
29568621 |
tacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaacatcatcaatgcttc---atcatcatcatcatcacac |
29568525 |
T |
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| Q |
444 |
tcacaaaaactctt |
457 |
Q |
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| T |
29568524 |
tcacaaaaactctt |
29568511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 428
Target Start/End: Original strand, 1758005 - 1758089
Alignment:
| Q |
344 |
tacagaatcaacaagattcaacgatgatcactcataaacagaaacaataaatgattattcaaacataatcaatgattcataatca |
428 |
Q |
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| T |
1758005 |
tacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaacatcatcaatgcttcatcatca |
1758089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 428
Target Start/End: Original strand, 27461857 - 27461941
Alignment:
| Q |
344 |
tacagaatcaacaagattcaacgatgatcactcataaacagaaacaataaatgattattcaaacataatcaatgattcataatca |
428 |
Q |
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| T |
27461857 |
tacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaacatcatcaatgcttcatcatca |
27461941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 428
Target Start/End: Complemental strand, 27521578 - 27521494
Alignment:
| Q |
344 |
tacagaatcaacaagattcaacgatgatcactcataaacagaaacaataaatgattattcaaacataatcaatgattcataatca |
428 |
Q |
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| T |
27521578 |
tacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaacatcatcaatgcttcatcatca |
27521494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 428
Target Start/End: Original strand, 18985964 - 18986041
Alignment:
| Q |
351 |
tcaacaagattcaacgatgatcactcataaacagaaacaataaatgattattcaaacataatcaatgattcataatca |
428 |
Q |
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| T |
18985964 |
tcaacaagaatccatggtgatccctcacaaacagaaacaatccatgattattccaacatcatcaatgcttcatcatca |
18986041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 417
Target Start/End: Original strand, 27481996 - 27482069
Alignment:
| Q |
344 |
tacagaatcaacaagattcaacgatgatcactcataaacagaaacaataaatgattattcaaacataatcaatg |
417 |
Q |
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| T |
27481996 |
tacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaacatcatcaatg |
27482069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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