View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13017_low_4 (Length: 452)
Name: NF13017_low_4
Description: NF13017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13017_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 4e-79; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 40458307 - 40458503
Alignment:
| Q |
18 |
gttgcatagttttttgagagaacgacaattgaaatccttgattcctgaattgccttgagaatagaaggtgaaagttgaagttcctcatcatcatcatttt |
117 |
Q |
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| T |
40458307 |
gttgcatagttttttgagagaacgacgattgaaatccttgattcctgaattgccttgagaatagaaggtgaaagttgaagttcc---tcatcatcatttt |
40458403 |
T |
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| Q |
118 |
gaatttgatgtggtaagaagaaggtcttcattttcttgttgcgtaaagcatgatagagattacctgtgaaggtacaataagtatcctcccctctaaaact |
217 |
Q |
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| T |
40458404 |
gaatttgatcatgtgggaagaaggtcttgattttcttgttgcgtaaagcatgatagagattacctgcgaaggtacaataagtatcttcccctctaaaact |
40458503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 33 - 216
Target Start/End: Complemental strand, 40405446 - 40405260
Alignment:
| Q |
33 |
gagagaacgacaattgaaatccttgattcctgaattgccttgagaatagaaggtgaaagttgaagttcctcatcatcat------cattttgaatttgat |
126 |
Q |
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| T |
40405446 |
gagagaacaacaattgaaatccttgactcccgaattgccttgagaatag---gtgaatgttgaagttgctcattatcattataatcattttgaatttgat |
40405350 |
T |
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| Q |
127 |
gtggtaagaagaaggtcttcattttcttgttgcgtaaagcatgatagagattacctgtgaaggtacaataagtatcctcccctctaaaac |
216 |
Q |
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| T |
40405349 |
gtgggaagaagaaggtcttgattctcttgttgctcaaaccatgatagagattacctgtaaaggtacagtaagtgtcctcccctctaaaac |
40405260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 376 - 414
Target Start/End: Original strand, 40458644 - 40458682
Alignment:
| Q |
376 |
tagagaatccacgcggtttgttgttgactcctctttaat |
414 |
Q |
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| T |
40458644 |
tagagaatccacgcggtttgctgttgactcctctttaat |
40458682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 216
Target Start/End: Complemental strand, 40407816 - 40407736
Alignment:
| Q |
136 |
agaaggtcttcattttcttgttgcgtaaagcatgatagagattacctgtgaaggtacaataagtatcctcccctctaaaac |
216 |
Q |
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| T |
40407816 |
agaaggtcttgattctcttgttacgcagagcatgatagagactacctgtgaaggtatagtaagtgtccacctttctaaaac |
40407736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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